RNA–Protein interactions for RNA: ENST00000554975.5

SHMT2-216, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 780 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-216ENST00000554975 CNNM2Q9H8M5 875 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 MKNK2Q9HBH9 465 aa12.74□□□□□ -0.37
SHMT2-216ENST00000554975 EPB41L4AQ9HCS5 686 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 RRAGDQ9NQL2 400 aaPredicted RBP12.74□□□□□ -0.37
SHMT2-216ENST00000554975 TECTAO75443 2155 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 TNKSO95271 1327 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 PATL2C9JE40 543 aaKnown RBP12.73□□□□□ -0.37
SHMT2-216ENST00000554975 ZBED4O75132 1171 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 TPM3P06753 285 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 PFKMP08237 780 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 SBK1Q52WX2 424 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 TAPT1Q6NXT6 567 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 EEPD1Q7L9B9 569 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 MB21D2Q8IYB1 491 aaPredicted RBP12.73□□□□□ -0.37
SHMT2-216ENST00000554975 CHST13Q8NET6 341 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 BICD2Q8TD16 824 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 PHOX2BQ99453 314 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 AP5M1Q9H0R1 490 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 A1CFQ9NQ94 594 aaKnown RBP12.73□□□□□ -0.37
SHMT2-216ENST00000554975 TAF6LQ9Y6J9 622 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 ZDBF2Q9HCK1 2354 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 CFAP54Q96N23 3096 aa12.73□□□□□ -0.37
SHMT2-216ENST00000554975 PPAN-P2RY11A0A0B4J1V8 794 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-216ENST00000554975 GOLGA8BA8MQT2 603 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 CPLX1O14810 134 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 PRC1O43663 620 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 PTMAP06454 111 aaKnown RBP12.72□□□□□ -0.37
SHMT2-216ENST00000554975 SLC3A2P08195 630 aaKnown RBP12.72□□□□□ -0.37
SHMT2-216ENST00000554975 PDZRN4Q6ZMN7 1036 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-216ENST00000554975 BRAPQ7Z569 592 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 PHOSPHO2Q8TCD6 241 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 LEO1Q8WVC0 666 aaPredicted RBP12.72□□□□□ -0.37
SHMT2-216ENST00000554975 CHAMP1Q96JM3 812 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 PURBQ96QR8 312 aaKnown RBP12.72□□□□□ -0.37
SHMT2-216ENST00000554975 ZNF287Q9HBT7 754 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 MYH6P13533 1939 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 NLRC5Q86WI3 1866 aa12.72□□□□□ -0.37
SHMT2-216ENST00000554975 NID2Q14112 1375 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 ZNF536O15090 1300 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 GOLGA6L6A8MZA4 724 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 PRDM1O75626 825 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 ACTN1P12814 892 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 RASA1P20936 1047 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 SSTR3P32745 418 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-216ENST00000554975 RCAN1P53805 252 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 APOBRQ0VD83 1088 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 CCDC73Q6ZRK6 1079 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 FERMT3Q86UX7 667 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 ZNF444Q8N0Y2 327 aaPredicted RBP12.71□□□□□ -0.37
SHMT2-216ENST00000554975 TNMDQ9H2S6 317 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 NYAP2Q9P242 653 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 FBXO40Q9UH90 709 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 MTUS1Q9ULD2 1270 aa12.71□□□□□ -0.37
SHMT2-216ENST00000554975 NOL7Q9UMY1 257 aaKnown RBP12.71□□□□□ -0.37
SHMT2-216ENST00000554975 MICAL3Q7RTP6 2002 aa12.71□□□□□ -0.38
SHMT2-216ENST00000554975 SPTBN4Q9H254 2564 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 ZEB2O60315 1214 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 JAK2O60674 1132 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 FGAP02671 866 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 IQCF3P0C7M6 154 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 KCNA5P22460 613 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 PDIA3P30101 505 aaKnown RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 NT5C2P49902 561 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 DEFB103AP81534 67 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 PURAQ00577 322 aaKnown RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 PDE4BQ07343 736 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 PPARAQ07869 468 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 GPNMBQ14956 572 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 SART3Q15020 963 aaKnown RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 TCTN1Q2MV58 587 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 LEXMQ3ZCV2 418 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 RBM43Q6ZSC3 357 aaKnown RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 FAM200AQ8TCP9 573 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 SEZ6LQ9BYH1 1024 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 KRT23Q9C075 422 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 FTOQ9C0B1 505 aaKnown RBP eCLIP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 CLSTN2Q9H4D0 955 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 RNF41Q9H4P4 317 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 ACAD9Q9H845 621 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 SUGCTQ9HAC7 445 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 RNF146Q9NTX7 359 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 CLIP2Q9UDT6 1046 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 NAP1L2Q9ULW6 460 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 ZKSCAN5Q9Y2L8 839 aa12.7□□□□□ -0.38
SHMT2-216ENST00000554975 CTDP1Q9Y5B0 961 aaPredicted RBP12.7□□□□□ -0.38
SHMT2-216ENST00000554975 STK36Q9NRP7 1315 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 IGKV6D-41A0A0C4DH26 115 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 KLF18A0A0U1RQI7 1052 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 ASB14A6NK59 587 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 KIF28PB7ZC32 967 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 SNAP25P60880 206 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 IQSEC1Q6DN90 963 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 LRRC47Q8N1G4 583 aaKnown RBP12.69□□□□□ -0.38
SHMT2-216ENST00000554975 RNF214Q8ND24 703 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 FUCA2Q9BTY2 467 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 LMCD1Q9NZU5 365 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 FEM1BQ9UK73 627 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 Q9Y3F1 56 aa12.69□□□□□ -0.38
SHMT2-216ENST00000554975 POTEB3A0JP26 581 aa12.68□□□□□ -0.38
SHMT2-216ENST00000554975 ZNF500O60304 480 aaPredicted RBP12.68□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 28.4 ms