RNA–Protein interactions for RNA: ENST00000554785.1

PRPF39-208, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 2

Gene PRPF39, Length 2,121 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-208ENST00000554785 LCP1P13796 627 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 RBM10P98175 930 aaKnown RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SMAD4Q13485 552 aaKnown RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 TARBP2Q15633 366 aaKnown RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 NLRP10Q86W26 655 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 ZNF227Q86WZ6 799 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 USP33Q8TEY7 942 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 DDX11Q96FC9 970 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 TSPAN17Q96FV3 270 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 MMP19Q99542 508 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SPATA6Q9NWH7 488 aaPredicted RBP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 SNTG2Q9NY99 539 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP2.27□□□□□ -2.05
PRPF39-208ENST00000554785 PMF1-BGLAPU3KQ54 211 aa2.27□□□□□ -2.05
PRPF39-208ENST00000554785 C22orf46C9J442 243 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 C8BP07358 591 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 ECI1P42126 302 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 PLP2Q04941 152 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 IFRD2Q12894 506 aaPredicted RBP2.26□□□□□ -2.05
PRPF39-208ENST00000554785 RASGRF1Q13972 1273 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 RASA3Q14644 834 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 ZNF827Q17R98 1081 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 GIMAP6Q6P9H5 292 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 LIPIQ6XZB0 460 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 EEPD1Q7L9B9 569 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 B3GNT8Q7Z7M8 397 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 FERMT3Q86UX7 667 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 NETO2Q8NC67 525 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 RCBTB1Q8NDN9 531 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 C1orf159Q96HA4 380 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 GORASP1Q9BQQ3 440 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 RNF38Q9H0F5 515 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 FAN1Q9Y2M0 1017 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 FANCD2Q9BXW9 1451 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 WIZO95785 1651 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 TSPOAP1O95153 1857 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 SH3D21A4FU49 640 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 NOP56O00567 594 aaKnown RBP2.26□□□□□ -2.05
PRPF39-208ENST00000554785 SUSD5O60279 629 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 NPHS1O60500 1241 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 NAT2P11245 290 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 BCL6P41182 706 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 KCNC1P48547 511 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 ZNF143P52747 638 aaPredicted RBP2.26□□□□□ -2.05
PRPF39-208ENST00000554785 CACNB2Q08289 660 aaPredicted RBP2.26□□□□□ -2.05
PRPF39-208ENST00000554785 SV2CQ496J9 727 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 MTERF2Q49AM1 385 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 POMZP3Q6PJE2 187 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 CEP68Q76N32 757 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 CABP7Q86V35 215 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 TMEM145Q8NBT3 493 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 ST13P5Q8NFI4 369 aaPredicted RBP2.26□□□□□ -2.05
PRPF39-208ENST00000554785 ZBTB8AQ96BR9 441 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 PEX11GQ96HA9 241 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 DNAJC7Q99615 494 aa2.26□□□□□ -2.05
PRPF39-208ENST00000554785 MROH2BQ7Z745 1585 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 URB2Q14146 1524 aaKnown RBP2.25□□□□□ -2.05
PRPF39-208ENST00000554785 TLDC2A0PJX2 215 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 SCG5P05408 212 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 STAT5AP42229 794 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 GFRA1P56159 465 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 RTP5Q14D33 572 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 NT5DC1Q5TFE4 455 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 MILR1Q7Z6M3 343 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 CARFQ8N187 725 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 CPA5Q8WXQ8 436 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 DDX1Q92499 740 aaKnown RBP2.25□□□□□ -2.05
PRPF39-208ENST00000554785 ZNF669Q96BR6 464 aaPredicted RBP2.25□□□□□ -2.05
PRPF39-208ENST00000554785 EPN3Q9H201 632 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 CDIP1Q9H305 208 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 WASF3Q9UPY6 502 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 TMA7Q9Y2S6 64 aaKnown RBP2.25□□□□□ -2.05
PRPF39-208ENST00000554785 PCDHA2Q9Y5H9 948 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 SRCAPQ6ZRS2 3230 aa2.25□□□□□ -2.05
PRPF39-208ENST00000554785 TRBV23OR9-2A0A075B6M9 112 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 IQCA1LA6NCM1 817 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 K7ESM1 405 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 AGRPO00253 132 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SMARCA5O60264 1052 aaPredicted RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 NOBOXO60393 691 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 MSCO60682 206 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SNRPB2P08579 225 aaKnown RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 HOXC12P31275 282 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SLC9A5Q14940 896 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 CR1LQ2VPA4 569 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SLC10A6Q3KNW5 377 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 CD300LDQ6UXZ3 194 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 SPATC1Q76KD6 591 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 ZNF761Q86XN6 746 aaPredicted RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 Q8N1Y9 231 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 LINC00482Q8N8I6 264 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 ARRDC4Q8NCT1 418 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 DIO2Q92813 273 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 C11orf84Q9BUA3 381 aaPredicted RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 LRP2BPQ9P2M1 347 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 PFDN2Q9UHV9 154 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 NUDT5Q9UKK9 219 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 TIMM13Q9Y5L4 95 aaPredicted RBP2.24□□□□□ -2.05
PRPF39-208ENST00000554785 X6R8D5 127 aa2.24□□□□□ -2.05
PRPF39-208ENST00000554785 CADPSQ9ULU8 1353 aa2.24□□□□□ -2.05
Retrieved 100 of 20,778 RNA–protein pairs in 54.6 ms