RNA–Protein interactions for RNA: ENST00000553949.1

SHMT2-209, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 552 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-209ENST00000553949 PLA2G4DQ86XP0 818 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 LENG9Q96B70 501 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 CDHR1Q96JP9 859 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 HMX1Q9NP08 348 aaPredicted RBP13.9□□□□□ -0.18
SHMT2-209ENST00000553949 KCNH7Q9NS40 1196 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 DDX25Q9UHL0 483 aaKnown RBP13.9□□□□□ -0.18
SHMT2-209ENST00000553949 FAM184BQ9ULE4 1060 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 MRVI1Q9Y6F6 885 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 CENPFP49454 3210 aa13.9□□□□□ -0.18
SHMT2-209ENST00000553949 C11orf97A0A1B0GVM6 126 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-209ENST00000553949 MAFGO15525 162 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 SLC37A4O43826 429 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 ARIH2O95376 493 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 MYCP01106 439 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-209ENST00000553949 ARP10275 920 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 TXNP10599 105 aaKnown RBP13.89□□□□□ -0.19
SHMT2-209ENST00000553949 TGFB3P10600 412 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 AKR1A1P14550 325 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 SMPD1P17405 629 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 NUCB2P80303 420 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 TNFAIP2Q03169 654 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 NBR1Q14596 966 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 TMEM63BQ5T3F8 832 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 FAM173BQ6P4H8 233 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 ZNF333Q96JL9 665 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 UNC93B1Q9H1C4 597 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 AGO4Q9HCK5 861 aaKnown RBP13.89□□□□□ -0.19
SHMT2-209ENST00000553949 DDX41Q9UJV9 622 aaKnown RBP13.89□□□□□ -0.19
SHMT2-209ENST00000553949 CIZ1Q9ULV3 898 aaPredicted RBP13.89□□□□□ -0.19
SHMT2-209ENST00000553949 LRRC37A2A6NM11 1700 aa13.89□□□□□ -0.19
SHMT2-209ENST00000553949 ADCY6O43306 1168 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 NEMFO60524 1076 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 MCM7P33993 719 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 SP2Q02086 613 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 ORC2Q13416 577 aaPredicted RBP13.88□□□□□ -0.19
SHMT2-209ENST00000553949 MTFR1Q15390 333 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 ZNF174Q15697 407 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 LY6KQ17RY6 165 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 DUSP28Q4G0W2 176 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 XRN2Q9H0D6 950 aaKnown RBP eCLIP13.88□□□□□ -0.196e-7■□□□□ 9.5
SHMT2-209ENST00000553949 PKD2L1Q9P0L9 805 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 DDX20Q9UHI6 824 aaKnown RBP13.88□□□□□ -0.19
SHMT2-209ENST00000553949 PCDHB6Q9Y5E3 794 aa13.88□□□□□ -0.19
SHMT2-209ENST00000553949 IPO5O00410 1097 aaKnown RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 NKRFO15226 690 aaKnown RBP eCLIP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 MSH4O15457 936 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 ATP9AO75110 1047 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 CCL5P13501 91 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 KCNA2P16389 499 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 UBA1P22314 1058 aaKnown RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 COL13A1Q5TAT6 717 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 ANO1Q5XXA6 986 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 POTEDQ86YR6 584 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 ETNPPLQ8TBG4 499 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 COPS5Q92905 334 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 LENG1Q96BZ8 264 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 UIMC1Q96RL1 719 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 SENP7Q9BQF6 1050 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 ZNF577Q9BSK1 485 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 KCNMB3Q9NPA1 279 aa13.87□□□□□ -0.19
SHMT2-209ENST00000553949 PAK6Q9NQU5 681 aaPredicted RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 GNEQ9Y223 722 aaKnown RBP13.87□□□□□ -0.19
SHMT2-209ENST00000553949 MCM3APO60318 1980 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 TBX3O15119 743 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 MSCO60682 206 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 DUSP11O75319 330 aaKnown RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 RARBP10826 455 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 PTGS1P23219 599 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 ITGB3BPQ13352 177 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 NEDD9Q14511 834 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 CALCRLQ16602 461 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 FOXD4L6Q3SYB3 417 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 CELF3Q5SZQ8 465 aaKnown RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 GJC2Q5T442 439 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 FOXD4L3Q6VB84 417 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 GIMAP8Q8ND71 665 aaPredicted RBP13.86□□□□□ -0.19
SHMT2-209ENST00000553949 SLC5A5Q92911 643 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 SDF4Q9BRK5 362 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 RNF208Q9H0X6 261 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 TMEM60Q9H2L4 133 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 CHMP5Q9NZZ3 219 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 Q9Y3F1 56 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 MYH7BA7E2Y1 1941 aa13.86□□□□□ -0.19
SHMT2-209ENST00000553949 DHX15O43143 795 aaKnown RBP13.85□□□□□ -0.19
SHMT2-209ENST00000553949 DYNC1LI2O43237 492 aaPredicted RBP13.85□□□□□ -0.19
SHMT2-209ENST00000553949 MARCH6O60337 910 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 SORBS3O60504 671 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 GGPS1O95749 300 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 GH1P01241 217 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 ARHGAP1Q07960 439 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 LAMC2Q13753 1193 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 LHX8Q68G74 356 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 METTL7BQ6UX53 244 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 CYFIP1Q7L576 1253 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 TLK2Q86UE8 772 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 DHX37Q8IY37 1157 aaKnown RBP13.85□□□□□ -0.19
SHMT2-209ENST00000553949 C4orf32Q8N8J7 132 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 OR6J1Q8NGC5 347 aa13.85□□□□□ -0.19
SHMT2-209ENST00000553949 HAS1Q92839 578 aa13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 16.5 ms