RNA–Protein interactions for RNA: ENST00000553888.5

VIPAS39-206, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

APPRIS P1 TSL 2 BASIC

Gene VIPAS39, Length 2,934 nt, Biotype protein coding, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-206ENST00000553888 PEX10O60683 326 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 CHRM1P11229 460 aaPredicted RBP14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 IDEP14735 1019 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 BACE1P56817 501 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 C9orf131Q5VYM1 1079 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 VSTM4Q8IW00 320 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 ZNF280CQ8ND82 737 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 DDX12PQ92771 950 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 POLD4Q9HCU8 107 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 PKD2L1Q9P0L9 805 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 RWDD2AQ9UIY3 292 aa14.27□□□□□ -0.13
VIPAS39-206ENST00000553888 CHMP2AO43633 222 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 MOXD1Q6UVY6 613 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 CATSPER3Q86XQ3 398 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 SLC38A10Q9HBR0 1119 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 STK17AQ9UEE5 414 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 PPP1R9AQ9ULJ8 1098 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 RIPK3Q9Y572 518 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 USP27XA6NNY8 438 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 ARP10275 920 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 SKILP12757 684 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 CIITAP33076 1130 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 PLCD3Q8N3E9 789 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 NAP1L4Q99733 375 aaKnown RBP14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 MAGEF1Q9HAY2 307 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 VAV3Q9UKW4 847 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 WDR90Q96KV7 1748 aa14.26□□□□□ -0.13
VIPAS39-206ENST00000553888 NKRFO15226 690 aaKnown RBP eCLIP14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 CBFA2T2O43439 604 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 CYP3A4P08684 503 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 LRRC41Q15345 812 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 SLFN12Q8IYM2 578 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 FGFBP2Q9BYJ0 223 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 RNF216Q9NWF9 866 aaPredicted RBP14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 RGL1Q9NZL6 768 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 TBC1D7Q9P0N9 293 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 USP2O75604 605 aaPredicted RBP14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 SPATA31C1P0DKV0 1188 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 MOB2Q70IA6 237 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 IRF2BP1Q8IU81 584 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 TAB2Q9NYJ8 693 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 PTPRFP10586 1907 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 MYL1P05976 194 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 NR1I3Q14994 352 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 KRT31Q15323 416 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 VPS16Q9H269 839 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 BCAS3Q9H6U6 928 aa14.25□□□□□ -0.13
VIPAS39-206ENST00000553888 A0A1B0GTH6 734 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 DDX39AO00148 427 aaKnown RBP14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 OFD1O75665 1012 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 AMPD3Q01432 767 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 FAM43BQ6ZT52 329 aaPredicted RBP14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 DNAJC19Q96DA6 116 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 IMPACTQ9P2X3 320 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 VWA5AO00534 786 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 ZBTB39O15060 712 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 PLA2G4BP0C869 781 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 HSD17B4P51659 736 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 PABPC4Q13310 644 aaKnown RBP eCLIP14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 HYIQ5T013 277 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 CEP135Q66GS9 1140 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 ANKRD40Q6AI12 368 aa14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 PPP1R3FQ6ZSY5 799 aaPredicted RBP14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 DUSP9Q99956 384 aaKnown RBP14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 ADD3Q9UEY8 706 aaKnown RBP14.24□□□□□ -0.13
VIPAS39-206ENST00000553888 KCNJ18B7U540 433 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 ADKP55263 362 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 VGLL4Q14135 290 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 CTTNQ14247 550 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 KCNJ12Q14500 433 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 CT47A1Q5JQC4 288 aaPredicted RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 MCTP2Q6DN12 878 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 TTI2Q6NXR4 508 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 DDX55Q8NHQ9 600 aaKnown RBP eCLIP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 TRIM47Q96LD4 638 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 TAAR1Q96RJ0 339 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 SRRTQ9BXP5 876 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 ADARB2Q9NS39 739 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 SPTLC3Q9NUV7 552 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 ITGB5P18084 799 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 EIF2AK2P19525 551 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 SFPQP23246 707 aaKnown RBP eCLIP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 USP14P54578 494 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 CEP55Q53EZ4 464 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 DNTTIP2Q5QJE6 756 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 LRCH2Q5VUJ6 765 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 NSMFQ6X4W1 530 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 UNC13DQ70J99 1090 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 GPBP1Q86WP2 473 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 TRERF1Q96PN7 1200 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 WDR11Q9BZH6 1224 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 SEMA6BQ9H3T3 888 aa14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 TRMT1Q9NXH9 659 aaKnown RBP14.23□□□□□ -0.13
VIPAS39-206ENST00000553888 DOCK5Q9H7D0 1870 aa14.22□□□□□ -0.13
VIPAS39-206ENST00000553888 PSMA7O14818 248 aa14.22□□□□□ -0.13
VIPAS39-206ENST00000553888 TBX3O15119 743 aa14.22□□□□□ -0.13
VIPAS39-206ENST00000553888 ERCC3P19447 782 aa14.22□□□□□ -0.13
VIPAS39-206ENST00000553888 GSDMDP57764 484 aa14.22□□□□□ -0.13
VIPAS39-206ENST00000553888 RPS6P62753 249 aaKnown RBP14.22□□□□□ -0.13
VIPAS39-206ENST00000553888 TRAF1Q13077 416 aa14.22□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 19.2 ms