RNA–Protein interactions for RNA: ENST00000553437.1

CCDC88C-206, Transcript of coiled-coil domain containing 88C, humanhuman

TSL 2

Gene CCDC88C, Length 550 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88C-206ENST00000553437 UBA1P22314 1058 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 ICAM3P32942 547 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 METAP2P50579 478 aaKnown RBP eCLIP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 SEMA3FQ13275 785 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 TOB2Q14106 344 aaPredicted RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 UBE2SQ16763 222 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 NBPF20Q3BBV1 942 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 CELF3Q5SZQ8 465 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 MYSM1Q5VVJ2 828 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 PCNX4Q63HM2 1172 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 MFSD5Q6N075 450 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 XRRA1Q6P2D8 792 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 DHX37Q8IY37 1157 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 PPP1R13LQ8WUF5 828 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 TM6SF1Q9BZW5 370 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 BCAS3Q9H6U6 928 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 TRMT13Q9NUP7 481 aaKnown RBP11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 RTEL1Q9NZ71 1219 aa11.82□□□□□ -0.52
CCDC88C-206ENST00000553437 CCDC196A0A1B0GTZ2 297 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 STXBP3O00186 592 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 GGPS1O95749 300 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 PDIA3P30101 505 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 NTRK3Q16288 839 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 NFRKBQ6P4R8 1299 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 C16orf59Q7L2K0 433 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 PPTC7Q8NI37 304 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 NOC4LQ9BVI4 516 aaKnown RBP11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 PPP1R12CQ9BZL4 782 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 BARHL2Q9NY43 387 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 NAP1L2Q9ULW6 460 aaPredicted RBP11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 UMODL1Q5DID0 1318 aa11.81□□□□□ -0.52
CCDC88C-206ENST00000553437 hCG_1984214I3L0E3 225 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 SORBS3O60504 671 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 CYP2C18P33260 490 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 NAPAP54920 295 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 FPGSQ05932 587 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 PTPN11Q06124 597 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 PKN1Q16512 942 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 DGKDQ16760 1214 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 PFKFB3Q16875 520 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 HSDL1Q3SXM5 330 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 GNPTABQ3T906 1256 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 PPP1R18Q6NYC8 613 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 SESTD1Q86VW0 696 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 TEX2Q8IWB9 1127 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 ZNF713Q8N859 430 aaPredicted RBP11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 SPATA33Q96N06 139 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 UPF3BQ9BZI7 483 aaKnown RBP11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 HIPK3Q9H422 1215 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 RIC8AQ9NPQ8 531 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 PCDHA6Q9UN73 950 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 PCDHA8Q9Y5H6 950 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 CYP46A1Q9Y6A2 500 aa11.8□□□□□ -0.52
CCDC88C-206ENST00000553437 LTBP2Q14767 1821 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 SMCO2A6NFE2 343 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 HAS3O00219 553 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 ADAMTS3O15072 1205 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 PRPF3O43395 683 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 FIBPO43427 364 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 PPFIA4O75335 1185 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 F2P00734 622 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 SUPT20HL2P0C7V6 817 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 CYP2C9P11712 490 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 CSF2RAP15509 400 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 ITGB5P18084 799 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 GPR153Q6NV75 609 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 VWCEQ96DN2 955 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 CTAGE1Q96RT6 745 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 SENP7Q9BQF6 1050 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 C16orf70Q9BSU1 422 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 WNT8AQ9H1J5 351 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 NCOA5Q9HCD5 579 aaKnown RBP11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 TELO2Q9Y4R8 837 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 UBIAD1Q9Y5Z9 338 aa11.79□□□□□ -0.52
CCDC88C-206ENST00000553437 C19orf67A6NJJ6 358 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 SPDYE3A6NKU9 549 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 ATP9AO75110 1047 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 ZNF286BP0CG31 522 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 SCG2P13521 617 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 IFNAR1P17181 557 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 CLK2P49760 499 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 PSEN2P49810 448 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 ADCY7P51828 1080 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 PPIGQ13427 754 aaKnown RBP eCLIP11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 NEDD9Q14511 834 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 FAM47CQ5HY64 1035 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 TMEM240Q5SV17 173 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 GDF6Q6KF10 455 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 METTL7BQ6UX53 244 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 CYFIP1Q7L576 1253 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 TMEM199Q8N511 208 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 PHKBQ93100 1093 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 GPRASP2Q96D09 838 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 IL17RAQ96F46 866 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 ZNF274Q96GC6 653 aaPredicted RBP11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 BUD13Q9BRD0 619 aaKnown RBP eCLIP11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 LARP6Q9BRS8 491 aaKnown RBP11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 MLXIPQ9HAP2 919 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 JADE2Q9NQC1 790 aa11.78□□□□□ -0.52
CCDC88C-206ENST00000553437 PDRG1Q9NUG6 133 aa11.78□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 25.4 ms