RNA–Protein interactions for RNA: ENST00000552045.1

LIMA1-210, Transcript of LIM domain and actin binding 1, humanhuman

TSL 2

Gene LIMA1, Length 386 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-210ENST00000552045 METTL22Q9BUU2 404 aaPredicted RBP8.14□□□□□ -1.11
LIMA1-210ENST00000552045 ERVK13-1Q9NX77 482 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 IP6K2Q9UHH9 426 aa8.14□□□□□ -1.11
LIMA1-210ENST00000552045 LUC7L2Q9Y383 392 aaKnown RBP8.14□□□□□ -1.11
LIMA1-210ENST00000552045 H7BY64 318 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 PRPF3O43395 683 aaKnown RBP8.13□□□□□ -1.11
LIMA1-210ENST00000552045 TGM5O43548 720 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 NPHS1O60500 1241 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 MT-CO1P00395 513 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 ITGB2P05107 769 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 KRT18P05783 430 aaKnown RBP8.13□□□□□ -1.11
LIMA1-210ENST00000552045 TEKQ02763 1124 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 BROXQ5VW32 411 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 NLRP10Q86W26 655 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 OSTM1Q86WC4 334 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 BOCQ9BWV1 1114 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 JAM3Q9BX67 310 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 SMURF1Q9HCE7 757 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 TCF7L1Q9HCS4 588 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 ADGRE2Q9UHX3 823 aa8.13□□□□□ -1.11
LIMA1-210ENST00000552045 WASHC2AQ641Q2 1341 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 LOC102724159A0A0B4J2E5 919 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 GOLGA6CA6NDK9 693 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 GOLGA6BA6NDN3 693 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 H7C1D1 291 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 FZD9O00144 591 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 GOLGA6DP0CG33 693 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 ZBTB48P10074 688 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-210ENST00000552045 CCND1P24385 295 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 RPL10P27635 214 aaKnown RBP8.12□□□□□ -1.11
LIMA1-210ENST00000552045 JAM2P57087 298 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 RHBDL3P58872 404 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 NFIAQ12857 509 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 PWP2Q15269 919 aaKnown RBP8.12□□□□□ -1.11
LIMA1-210ENST00000552045 WAPLQ7Z5K2 1190 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 CREG2Q8IUH2 290 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 TMEM169Q96HH4 297 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 FCRL2Q96LA5 508 aaPredicted RBP8.12□□□□□ -1.11
LIMA1-210ENST00000552045 OSBPL1AQ9BXW6 950 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 MYH16Q9H6N6 1097 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 C14orf119Q9NWQ9 140 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 GOLGA6AQ9NYA3 693 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 ZNF281Q9Y2X9 895 aa8.12□□□□□ -1.11
LIMA1-210ENST00000552045 SLC12A8A0AV02 714 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 WTIPA6NIX2 430 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-210ENST00000552045 KRT37O76014 449 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 SNUPNO95149 360 aaKnown RBP8.11□□□□□ -1.11
LIMA1-210ENST00000552045 ESR1P03372 595 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 AMY2AP04746 511 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 AMY2BP19961 511 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 GATA4P43694 442 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 EGR3Q06889 387 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 UBE4AQ14139 1066 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 GPR19Q15760 415 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 HLA-DQA1Q5Y7H0 255 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 CEP68Q76N32 757 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 Q8N1Y9 231 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 C1orf162Q8NEQ5 155 aaPredicted RBP8.11□□□□□ -1.11
LIMA1-210ENST00000552045 FAXDC2Q96IV6 333 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 DBNDD2Q9BQY9 259 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 ARNT2Q9HBZ2 717 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 LRRC4CQ9HCJ2 640 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 ATG3Q9NT62 314 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 BTG4Q9NY30 223 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 SPO11Q9Y5K1 396 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 SNX11Q9Y5W9 270 aa8.11□□□□□ -1.11
LIMA1-210ENST00000552045 PITPNM2Q9BZ72 1349 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 PLIN1O60240 522 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 GNAT1P11488 350 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 KRT15P19012 456 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 CEBPAP49715 358 aaPredicted RBP8.1□□□□□ -1.11
LIMA1-210ENST00000552045 PCBP2Q15366 365 aaKnown RBP eCLIP8.1□□□□□ -1.11
LIMA1-210ENST00000552045 TERF2Q15554 542 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 IFI16Q16666 785 aaKnown RBP8.1□□□□□ -1.11
LIMA1-210ENST00000552045 GFOD2Q3B7J2 385 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 CXorf57Q6NSI4 855 aaKnown RBP8.1□□□□□ -1.11
LIMA1-210ENST00000552045 HHIPL2Q6UWX4 724 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 ARHGAP36Q6ZRI8 547 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 MORC4Q8TE76 937 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 ATP13A1Q9HD20 1204 aa8.1□□□□□ -1.11
LIMA1-210ENST00000552045 TMEM265A0A087WTH1 108 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 TCRBV5S4A2TA0A5A2 114 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 CFBP00751 764 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 MYL1P05976 194 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 CT47B1P0C2W7 299 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-210ENST00000552045 RBP3P10745 1247 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 SLC9A1P19634 815 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 FPR2P25090 351 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 RECQLP46063 649 aaPredicted RBP8.09□□□□□ -1.11
LIMA1-210ENST00000552045 PHC1P78364 1004 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 KRT85P78386 507 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 IRF9Q00978 393 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 SPIRE1Q08AE8 756 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 ZNF174Q15697 407 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 CPSF6Q16630 551 aaKnown RBP eCLIP8.09□□□□□ -1.11
LIMA1-210ENST00000552045 HABP4Q5JVS0 413 aaKnown RBP8.09□□□□□ -1.11
LIMA1-210ENST00000552045 GORABQ5T7V8 394 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 PGM2L1Q6PCE3 622 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 RASSF3Q86WH2 238 aa8.09□□□□□ -1.11
LIMA1-210ENST00000552045 EXOC8Q8IYI6 725 aa8.09□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms