RNA–Protein interactions for RNA: ENST00000550331.1

NEK3-201, Transcript of NIMA related kinase 3, humanhuman

TSL 2

Gene NEK3, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEK3-201ENST00000550331 MUC6Q6W4X9 2439 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 RBM47A0AV96 593 aaKnown RBP8.95□□□□□ -0.98
NEK3-201ENST00000550331 B4GALT4O60513 344 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 SNHG28P0DPA3 235 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 ACRP10323 421 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 CYP2C18P33260 490 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 NMIQ13287 307 aaPredicted RBP8.95□□□□□ -0.98
NEK3-201ENST00000550331 MFSD6Q6ZSS7 791 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 CLEC4DQ8WXI8 215 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 HERVK_113Q902F9 699 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 PURBQ96QR8 312 aaKnown RBP8.95□□□□□ -0.98
NEK3-201ENST00000550331 NOC4LQ9BVI4 516 aaKnown RBP8.95□□□□□ -0.98
NEK3-201ENST00000550331 MAF1Q9H063 256 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 SLC28A3Q9HAS3 691 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 GPCPD1Q9NPB8 672 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 POLR3EQ9NVU0 708 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 DDX49Q9Y6V7 483 aaKnown RBP8.95□□□□□ -0.98
NEK3-201ENST00000550331 FRMPD2Q68DX3 1309 aaPredicted RBP8.95□□□□□ -0.98
NEK3-201ENST00000550331 CHD7Q9P2D1 2997 aa8.95□□□□□ -0.98
NEK3-201ENST00000550331 PTPDC1A2A3K4 754 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 B4DLN1 442 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 NKRFO15226 690 aaKnown RBP eCLIP8.94□□□□□ -0.98
NEK3-201ENST00000550331 FGBP02675 491 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 PFKMP08237 780 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 SUPT20HL2P0C7V6 817 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 BMP1P13497 986 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 PTGS1P23219 599 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 EDNRBP24530 442 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 CPT1AP50416 773 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 MRPL12P52815 198 aaKnown RBP8.94□□□□□ -0.98
NEK3-201ENST00000550331 HAND2P61296 217 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 PSMC6P62333 389 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 TFF2Q03403 129 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 SKIV2LQ15477 1246 aaKnown RBP8.94□□□□□ -0.98
NEK3-201ENST00000550331 AAK1Q2M2I8 961 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 TMEM63BQ5T3F8 832 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 GPATCH4Q5T3I0 446 aaKnown RBP8.94□□□□□ -0.98
NEK3-201ENST00000550331 SLC30A10Q6XR72 485 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 RNF207Q6ZRF8 634 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 DGKHQ86XP1 1220 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 TBC1D10CQ8IV04 446 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 SMC5Q8IY18 1101 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 DNERQ8NFT8 737 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 ESR2Q92731 530 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 IRF7Q92985 503 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 LRFN3Q9BTN0 628 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 WDR11Q9BZH6 1224 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 LNPKQ9C0E8 428 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 TRPV6Q9H1D0 765 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 ALDH8A1Q9H2A2 487 aaPredicted RBP8.94□□□□□ -0.98
NEK3-201ENST00000550331 OSBPL3Q9H4L5 887 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 YBX2Q9Y2T7 364 aaKnown RBP8.94□□□□□ -0.98
NEK3-201ENST00000550331 ARIH1Q9Y4X5 557 aaPredicted RBP8.94□□□□□ -0.98
NEK3-201ENST00000550331 UMODL1Q5DID0 1318 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 RAD50Q92878 1312 aa8.94□□□□□ -0.98
NEK3-201ENST00000550331 ZNF213O14771 459 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 KPNA6O60684 536 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 SDSP20132 328 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 CALML3P27482 149 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 KCNQ1P51787 676 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 RPS6P62753 249 aaKnown RBP8.93□□□□□ -0.98
NEK3-201ENST00000550331 PURAQ00577 322 aaKnown RBP8.93□□□□□ -0.98
NEK3-201ENST00000550331 PDE4DQ08499 809 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 PPP2R5BQ15173 497 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 BRDTQ58F21 947 aaPredicted RBP8.93□□□□□ -0.98
NEK3-201ENST00000550331 CCDC178Q5BJE1 867 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 RPUSD2Q8IZ73 545 aaKnown RBP8.93□□□□□ -0.98
NEK3-201ENST00000550331 RGS22Q8NE09 1264 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 OR6J1Q8NGC5 347 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 SCFD2Q8WU76 684 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 RILPL2Q969X0 211 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 MTG1Q9BT17 334 aaPredicted RBP8.93□□□□□ -0.98
NEK3-201ENST00000550331 WNT8AQ9H1J5 351 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 RWDD1Q9H446 243 aaPredicted RBP8.93□□□□□ -0.98
NEK3-201ENST00000550331 EPHX3Q9H6B9 360 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 NEDD4P46934 1319 aa8.93□□□□□ -0.98
NEK3-201ENST00000550331 TNKSO95271 1327 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 A6NJR5 290 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 ACTN4O43707 911 aaKnown RBP8.92□□□□□ -0.98
NEK3-201ENST00000550331 CCL23P55773 120 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 PTPN11Q06124 597 aaPredicted RBP8.92□□□□□ -0.98
NEK3-201ENST00000550331 TMEM31Q5JXX7 168 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 PPP2R2DQ66LE6 453 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 NFRKBQ6P4R8 1299 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 OTOP2Q7RTS6 562 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 CHD1LQ86WJ1 897 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 IQCA1Q86XH1 822 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 NPAS3Q8IXF0 933 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 TTC13Q8NBP0 860 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 ANKS1AQ92625 1134 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 NXF1Q9UBU9 619 aaKnown RBP8.92□□□□□ -0.98
NEK3-201ENST00000550331 TRANK1O15050 2925 aa8.92□□□□□ -0.98
NEK3-201ENST00000550331 ABCB11O95342 1321 aa8.91□□□□□ -0.98
NEK3-201ENST00000550331 HIP1O00291 1037 aa8.91□□□□□ -0.98
NEK3-201ENST00000550331 CD2BP2O95400 341 aaKnown RBP8.91□□□□□ -0.98
NEK3-201ENST00000550331 MYL3P08590 195 aa8.91□□□□□ -0.98
NEK3-201ENST00000550331 TXNP10599 105 aaKnown RBP8.91□□□□□ -0.98
NEK3-201ENST00000550331 RFC2P35250 354 aa8.91□□□□□ -0.98
NEK3-201ENST00000550331 RABGGTBP53611 331 aa8.91□□□□□ -0.98
NEK3-201ENST00000550331 NUCB1Q02818 461 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 39.3 ms