RNA–Protein interactions for RNA: ENST00000550220.1

VTI1BP3-201, Transcript of vesicle transport through interaction with t-SNAREs 1B pseudogene 3, humanhuman

BASIC

Gene VTI1BP3, Length 636 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VTI1BP3-201ENST00000550220 HAS3O00219 553 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 NOP56O00567 594 aaKnown RBP12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 RGS20O76081 388 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 BAIAP3O94812 1187 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 GGPS1O95749 300 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 SELPP16109 830 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 RBL2Q08999 1139 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 KRT32Q14532 448 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 MFSD10Q14728 455 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 KIAA0753Q2KHM9 967 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 TSGA10IPQ3SY00 556 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 DEFB128Q7Z7B8 93 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 NLRX1Q86UT6 975 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 FANCBQ8NB91 859 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 CDHR1Q96JP9 859 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 INPP4AQ96PE3 977 aaPredicted RBP12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 SLC9A7Q96T83 725 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 SENP7Q9BQF6 1050 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 USP26Q9BXU7 913 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 HDAC6Q9UBN7 1215 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 LRRC37A2A6NM11 1700 aa12.54□□□□□ -0.4
VTI1BP3-201ENST00000550220 LCTP09848 1927 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 SPATA31C2B4DYI2 1134 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 MAFGO15525 162 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 FIBPO43427 364 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 EFCAB14O75071 495 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 HMGB1P09429 215 aaKnown RBP12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 UBA1P22314 1058 aaKnown RBP12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 PBX2P40425 430 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 PTK7Q13308 1070 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 PCNX4Q63HM2 1172 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 GDF6Q6KF10 455 aaPredicted RBP12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 METTL7BQ6UX53 244 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 SGMS1Q86VZ5 419 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 PIBF1Q8WXW3 757 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 NEK1Q96PY6 1258 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 ALG1Q9BT22 464 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 PSTPIP2Q9H939 334 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 RBM28Q9NW13 759 aaKnown RBP12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 FRMPD4Q14CM0 1322 aa12.53□□□□□ -0.4
VTI1BP3-201ENST00000550220 SCN10AQ9Y5Y9 1956 aa12.52□□□□□ -0.4
VTI1BP3-201ENST00000550220 COL6A3P12111 3177 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 H3BRB1 525 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 CDC45O75419 566 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 GNAT1P11488 350 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 HSDL1Q3SXM5 330 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 LRRC8DQ7L1W4 858 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 DHX32Q7L7V1 743 aaKnown RBP12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 SRBD1Q8N5C6 995 aaKnown RBP12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 MYL10Q9BUA6 226 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 TUT1Q9H6E5 874 aaKnown RBP12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 EHMT1Q9H9B1 1298 aa12.52□□□□□ -0.41
VTI1BP3-201ENST00000550220 SPDYE3A6NKU9 549 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 MEIS2O14770 477 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 KCNJ6P48051 423 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 RCAN1P53805 252 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 MRPS9P82933 396 aaKnown RBP12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 SP2Q02086 613 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 USP17L6PQ6QN14 398 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 IL31RAQ8NI17 732 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 SYMPKQ92797 1274 aaKnown RBP12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 VWCEQ96DN2 955 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 C16orf70Q9BSU1 422 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 GLT8D2Q9H1C3 349 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 NKX2-4Q9H2Z4 354 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZNF215Q9UL58 517 aaPredicted RBP12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 EMSYQ7Z589 1322 aa12.51□□□□□ -0.41
VTI1BP3-201ENST00000550220 LAMA2P24043 3122 aaKnown RBP12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 ABHD14A-ACY1A0A1B0GW23 586 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 C17orf102A2RUQ5 167 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 hCG_1984214I3L0E3 225 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 CAND2O75155 1236 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 PLEKHA8P1O95397 391 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 CXCL10P02778 98 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZNF286BP0CG31 522 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 CKBP12277 381 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 PPP2R2DQ66LE6 453 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 CNKSR3Q6P9H4 555 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 TMTC3Q6ZXV5 915 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZNF713Q8N859 430 aaPredicted RBP12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 GPRASP2Q96D09 838 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 CTAGE1Q96RT6 745 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 RTEL1Q9NZ71 1219 aa12.5□□□□□ -0.41
VTI1BP3-201ENST00000550220 CCDC196A0A1B0GTZ2 297 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 ZBTB43O43298 467 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 FOSP01100 380 aaPredicted RBP12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 LGALS2P05162 132 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 RABGGTBP53611 331 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 EXOSC10Q01780 885 aaKnown RBP12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 IKBKEQ14164 716 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 CYFIP1Q7L576 1253 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 SERINC5Q86VE9 423 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 MICU3Q86XE3 530 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 HERC6Q8IVU3 1022 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 PPP1R13LQ8WUF5 828 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 TNPO1Q92973 898 aaKnown RBP12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 ATP6V0A1Q93050 837 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 GPR20Q99678 358 aa12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 TSPYL2Q9H2G4 693 aaPredicted RBP12.49□□□□□ -0.41
VTI1BP3-201ENST00000550220 PRDM12Q9H4Q4 367 aa12.49□□□□□ -0.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms