RNA–Protein interactions for RNA: ENST00000544504.5

YBX3-215, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 583 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-215ENST00000544504 DNERQ8NFT8 737 aa10.79□□□□□ -0.68
YBX3-215ENST00000544504 FERMT2Q96AC1 680 aa10.79□□□□□ -0.68
YBX3-215ENST00000544504 NUDT12Q9BQG2 462 aa10.79□□□□□ -0.68
YBX3-215ENST00000544504 MOV10L1Q9BXT6 1211 aaKnown RBP10.79□□□□□ -0.68
YBX3-215ENST00000544504 TMEM260Q9NX78 707 aa10.79□□□□□ -0.68
YBX3-215ENST00000544504 ADD3Q9UEY8 706 aaKnown RBP10.79□□□□□ -0.68
YBX3-215ENST00000544504 RIPK3Q9Y572 518 aa10.79□□□□□ -0.68
YBX3-215ENST00000544504 CYP3A7-CYP3A51PA0A087WV96 503 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 NEMFO60524 1076 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 CCNT1O60563 726 aaKnown RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 CNMDO75829 334 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 STAM2O75886 525 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 MBD3O95983 291 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 FCER1AP12319 257 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 ERCC3P19447 782 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 ATP2B1P20020 1258 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 CYP3A7P24462 503 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 MAPK4P31152 587 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 HOXA13P31271 388 aaPredicted RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 ZNF76P36508 570 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 PRPHP41219 470 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 ME1P48163 572 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 UBE2HP62256 183 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 CEBPZQ03701 1054 aaKnown RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 CACNB2Q08289 660 aaPredicted RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 NFKBIBQ15653 356 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 LETM2Q2VYF4 491 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 EARS2Q5JPH6 523 aaKnown RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 FCHSD1Q86WN1 690 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 ABRAQ8N0Z2 381 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 SYTL5Q8TDW5 730 aaPredicted RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 NSUN6Q8TEA1 469 aaKnown RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 IWS1Q96ST2 819 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 TTYH1Q9H313 450 aaPredicted RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 A1CFQ9NQ94 594 aaKnown RBP10.78□□□□□ -0.68
YBX3-215ENST00000544504 CYP39A1Q9NYL5 469 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 PCDHB6Q9Y5E3 794 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 CLIC4Q9Y696 253 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 IVNS1ABPQ9Y6Y0 642 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 FRMPD4Q14CM0 1322 aa10.78□□□□□ -0.68
YBX3-215ENST00000544504 TMEM265A0A087WTH1 108 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 FAM205CA6NFA0 338 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 TBX3O15119 743 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 CUTAO60888 179 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 PRPF40AO75400 957 aaKnown RBP10.77□□□□□ -0.69
YBX3-215ENST00000544504 CIITAP33076 1130 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 MCM7P33993 719 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 ATP2C1P98194 919 aaPredicted RBP10.77□□□□□ -0.69
YBX3-215ENST00000544504 SETQ01105 290 aaPredicted RBP10.77□□□□□ -0.69
YBX3-215ENST00000544504 BAATQ14032 418 aaPredicted RBP10.77□□□□□ -0.69
YBX3-215ENST00000544504 PTPAQ15257 358 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 SHHQ15465 462 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 ARHGEF16Q5VV41 709 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 NIPA1Q7RTP0 329 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 KRI1Q8N9T8 703 aaKnown RBP10.77□□□□□ -0.69
YBX3-215ENST00000544504 CRYGNQ8WXF5 182 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 RMDN3Q96TC7 470 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 MMP19Q99542 508 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 RAB34Q9BZG1 259 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 SENP6Q9GZR1 1112 aaPredicted RBP10.77□□□□□ -0.69
YBX3-215ENST00000544504 TXNRD2Q9NNW7 524 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 SLC5A4Q9NY91 659 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 RAPGEFL1Q9UHV5 662 aa10.77□□□□□ -0.69
YBX3-215ENST00000544504 A0A1W2PQ27 194 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 A0A1W2PQ64 194 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 A0A1W2PQD8 194 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 ADAMTS3O15072 1205 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 MARCH6O60337 910 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 OR52Z1P0C646 297 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 CCND2P30279 289 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 CCND3P30281 292 aaPredicted RBP10.76□□□□□ -0.69
YBX3-215ENST00000544504 PTGDRQ13258 359 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 ZNF174Q15697 407 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 TMEM266Q2M3C6 531 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 WDR78Q5VTH9 848 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 PCNX4Q63HM2 1172 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 ADALQ6DHV7 355 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 POTEEQ6S8J3 1075 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 SLC30A10Q6XR72 485 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 SLFN12Q8IYM2 578 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 ZNF579Q8NAF0 562 aaKnown RBP10.76□□□□□ -0.69
YBX3-215ENST00000544504 TBC1D5Q92609 795 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 FAM20AQ96MK3 541 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 MBOAT7Q96N66 472 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 GDPD2Q9HCC8 539 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 PXMP2Q9NR77 195 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 LMBRD1Q9NUN5 540 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 DDX25Q9UHL0 483 aaKnown RBP10.76□□□□□ -0.69
YBX3-215ENST00000544504 SRPRBQ9Y5M8 271 aaKnown RBP10.76□□□□□ -0.69
YBX3-215ENST00000544504 TCHHQ07283 1943 aa10.76□□□□□ -0.69
YBX3-215ENST00000544504 MAFGO15525 162 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 TAL1P17542 331 aaPredicted RBP10.75□□□□□ -0.69
YBX3-215ENST00000544504 PTPREP23469 700 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 HOXD11P31277 338 aaPredicted RBP10.75□□□□□ -0.69
YBX3-215ENST00000544504 LONP1P36776 959 aaKnown RBP10.75□□□□□ -0.69
YBX3-215ENST00000544504 RGS2P41220 211 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 CALCRLQ16602 461 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 Q3C1V9 767 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 GNPTABQ3T906 1256 aa10.75□□□□□ -0.69
YBX3-215ENST00000544504 Q4G0T1 1027 aa10.75□□□□□ -0.69
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms