RNA–Protein interactions for RNA: ENST00000542790.1

VPS33A-207, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 1,133 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-207ENST00000542790 KLHDC9Q8NEP7 349 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 BICD2Q8TD16 824 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 WASF1Q92558 559 aa14.21□□□□□ -0.13
VPS33A-207ENST00000542790 TSEN34Q9BSV6 310 aaKnown RBP14.21□□□□□ -0.13
VPS33A-207ENST00000542790 UPF3AQ9H1J1 476 aaKnown RBP14.21□□□□□ -0.13
VPS33A-207ENST00000542790 LARGE1O95461 756 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 CTDNEP1O95476 244 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 XBP1P17861 261 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 CST5P28325 142 aaPredicted RBP14.2□□□□□ -0.14
VPS33A-207ENST00000542790 NLRP5P59047 1200 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 AP3B2Q13367 1082 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 GNPTABQ3T906 1256 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 GNASQ5JWF2 1037 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 CCDC62Q6P9F0 684 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 IL31RAQ8NI17 732 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 SENP6Q9GZR1 1112 aaPredicted RBP14.2□□□□□ -0.14
VPS33A-207ENST00000542790 SH2B1Q9NRF2 756 aaPredicted RBP14.2□□□□□ -0.14
VPS33A-207ENST00000542790 VPS54Q9P1Q0 977 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 MRVI1Q9Y6F6 885 aa14.2□□□□□ -0.14
VPS33A-207ENST00000542790 MOXD2PA6NHM9 499 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 ZEB2O60315 1214 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 TGFB3P10600 412 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 CLK2P49760 499 aaKnown RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 MRPS9P82933 396 aaKnown RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 KCNA10Q16322 511 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 FSCN1Q16658 493 aaKnown RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 BRDTQ58F21 947 aaPredicted RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 TMEM63BQ5T3F8 832 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 GALNT17Q6IS24 598 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 NLRX1Q86UT6 975 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 REXO1Q8N1G1 1221 aaKnown RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 TMC2Q8TDI7 906 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 INPP4AQ96PE3 977 aaPredicted RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 RTEL1Q9NZ71 1219 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 ORC3Q9UBD5 711 aaPredicted RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 DDX41Q9UJV9 622 aaKnown RBP14.19□□□□□ -0.14
VPS33A-207ENST00000542790 PHF24Q9UPV7 400 aa14.19□□□□□ -0.14
VPS33A-207ENST00000542790 RGS20O76081 388 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 ARIH2O95376 493 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 MCM2P49736 904 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 CPT1AP50416 773 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 ACLYP53396 1101 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 LY6KQ17RY6 165 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 JAKMIP3Q5VZ66 844 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 CCSAPQ6IQ19 270 aaPredicted RBP14.18□□□□□ -0.14
VPS33A-207ENST00000542790 NSUN7Q8NE18 718 aaKnown RBP14.18□□□□□ -0.14
VPS33A-207ENST00000542790 OR6J1Q8NGC5 347 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 DPF3Q92784 378 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 LLPHQ9BRT6 129 aaKnown RBP14.18□□□□□ -0.14
VPS33A-207ENST00000542790 ANO3Q9BYT9 981 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 TMEM260Q9NX78 707 aa14.18□□□□□ -0.14
VPS33A-207ENST00000542790 RBBP6Q7Z6E9 1792 aaKnown RBP14.18□□□□□ -0.14
VPS33A-207ENST00000542790 MYADML2A6NDP7 307 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 SPATA31C2B4DYI2 1134 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 CTAGE5O15320 804 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 FIBPO43427 364 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 GH1P01241 217 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 ASGR1P07306 291 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 ICAM3P32942 547 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 LAMC2Q13753 1193 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 CCDC83Q8IWF9 413 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 FERMT2Q96AC1 680 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 CDHR1Q96JP9 859 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 GLT1D1Q96MS3 346 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 AIFM3Q96NN9 605 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 ALG1Q9BT22 464 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 PCDHA4Q9UN74 947 aa14.17□□□□□ -0.14
VPS33A-207ENST00000542790 ZNFX1Q9P2E3 1918 aaKnown RBP14.17□□□□□ -0.14
VPS33A-207ENST00000542790 CENPFP49454 3210 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 A0A1W2PQ45 241 aaPredicted RBP14.16□□□□□ -0.14
VPS33A-207ENST00000542790 A0A1W2PQY0 241 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 A6NJR5 290 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 MAFGO15525 162 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 KPNA6O60684 536 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 CABYRO75952 493 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 FDPSP14324 419 aaKnown RBP14.16□□□□□ -0.14
VPS33A-207ENST00000542790 PTGS1P23219 599 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 SREBF1P36956 1147 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 BEX3Q00994 111 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 SLC39A5Q6ZMH5 540 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 DHX37Q8IY37 1157 aaKnown RBP14.16□□□□□ -0.14
VPS33A-207ENST00000542790 DAGLBQ8NCG7 672 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 COPS5Q92905 334 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 EMID1Q96A84 441 aaPredicted RBP14.16□□□□□ -0.14
VPS33A-207ENST00000542790 GPRASP2Q96D09 838 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 PGBD1Q96JS3 809 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 STARD7Q9NQZ5 370 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 UBIAD1Q9Y5Z9 338 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 KIAA0100Q14667 2235 aaKnown RBP14.16□□□□□ -0.14
VPS33A-207ENST00000542790 PLXNA1Q9UIW2 1896 aa14.16□□□□□ -0.14
VPS33A-207ENST00000542790 ELP1O95163 1332 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 SMCHD1A6NHR9 2005 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 BAZ2BQ9UIF8 2168 aaKnown RBP14.15□□□□□ -0.14
VPS33A-207ENST00000542790 EVI5O60447 810 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 JAK2O60674 1132 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 ITGB5P18084 799 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 ZNF76P36508 570 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 ARHGAP4P98171 946 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 ARHGAP1Q07960 439 aa14.15□□□□□ -0.14
VPS33A-207ENST00000542790 ST3GAL1Q11201 340 aa14.15□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 53.5 ms