RNA–Protein interactions for RNA: ENST00000542663.1

CLSTN3-214, Transcript of calsyntenin 3, humanhuman

TSL 2

Gene CLSTN3, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-214ENST00000542663 JMJD4Q9H9V9 463 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 MRVI1Q9Y6F6 885 aa20.81■□□□□ 0.92
CLSTN3-214ENST00000542663 KDM4AO75164 1064 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 LGR5O75473 907 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 LAMC2Q13753 1193 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 ASPRV1Q53RT3 343 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 FBXO11Q86XK2 927 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 ZBTB47Q9UFB7 747 aaPredicted RBP20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 MRPL11Q9Y3B7 192 aaKnown RBP20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 C5orf42Q9H799 3197 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 COL4A6Q14031 1691 aa20.8■□□□□ 0.92
CLSTN3-214ENST00000542663 CFBP00751 764 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 IL9P15248 144 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 HSD17B4P51659 736 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 HTRA4P83105 476 aaPredicted RBP20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 GHRHRQ02643 423 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 MYSM1Q5VVJ2 828 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 DHX37Q8IY37 1157 aaKnown RBP20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 ENAHQ8N8S7 591 aaPredicted RBP20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 KAT14Q9H8E8 782 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 INSL6Q9Y581 213 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 MUC6Q6W4X9 2439 aa20.79■□□□□ 0.92
CLSTN3-214ENST00000542663 B4E1Z4 1266 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 ZNF213O14771 459 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 KCNA5P22460 613 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 HSDL1Q3SXM5 330 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 SERINC5Q86VE9 423 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 IQCA1Q86XH1 822 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 FBXO22Q8NEZ5 403 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 DBF4BQ8NFT6 615 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 SP7Q8TDD2 431 aaPredicted RBP20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 ZSCAN10Q96SZ4 725 aaPredicted RBP20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 VAT1LQ9HCJ6 419 aa20.78■□□□□ 0.92
CLSTN3-214ENST00000542663 TRIM6-TRIM34B2RNG4 842 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 SORBS3O60504 671 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 PPFIA4O75335 1185 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 PARP1P09874 1014 aaKnown RBP20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 SP2Q02086 613 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 CCDC178Q5BJE1 867 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 RILPL2Q969X0 211 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 CRBNQ96SW2 442 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 PDCD2LQ9BRP1 358 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 C16orf70Q9BSU1 422 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 ZSWIM5Q9P217 1185 aa20.77■□□□□ 0.92
CLSTN3-214ENST00000542663 EMSYQ7Z589 1322 aa20.77■□□□□ 0.91
CLSTN3-214ENST00000542663 MYO7AQ13402 2215 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 DHX16O60231 1041 aaKnown RBP20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 PPP1R11O60927 126 aaPredicted RBP20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 SDSP20132 328 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 PLEKHG4Q58EX7 1191 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 CELF3Q5SZQ8 465 aaKnown RBP20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 STOX1Q6ZVD7 989 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 MYOCDQ8IZQ8 938 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 GJD3Q8N144 294 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 STAG2Q8N3U4 1231 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 IL31RAQ8NI17 732 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 MRPL38Q96DV4 380 aaKnown RBP20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 OSBPL7Q9BZF2 842 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 LOXHD1Q8IVV2 1947 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 KIAA1671Q9BY89 1806 aa20.76■□□□□ 0.91
CLSTN3-214ENST00000542663 RSPH10B2B2RC85 870 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 GGPS1O95749 300 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 AMHP03971 560 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 RSPH10BP0C881 870 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 MYCLP12524 364 aaPredicted RBP20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 HOXC8P31273 242 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 THPOP40225 353 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 NT5C2P49902 561 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 MFAP1P55081 439 aaKnown RBP20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 HDAC1Q13547 482 aaPredicted RBP20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 PGM5Q15124 567 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 PTCRAQ6ISU1 281 aaPredicted RBP20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 NEK9Q8TD19 979 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 GPKOWQ92917 476 aaPredicted RBP eCLIP20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 SPATA33Q96N06 139 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 AMNQ9BXJ7 453 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 WDFY4Q6ZS81 3184 aa20.75■□□□□ 0.91
CLSTN3-214ENST00000542663 GRXCR2A6NFK2 248 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 PRR33A8MZF0 331 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 UBA1P22314 1058 aaKnown RBP20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 EPC2Q52LR7 807 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 VSIG10LQ86VR7 867 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 MTMR8Q96EF0 704 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 LNPKQ9C0E8 428 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 BCAS3Q9H6U6 928 aa20.74■□□□□ 0.91
CLSTN3-214ENST00000542663 HOXA13P31271 388 aaPredicted RBP20.73■□□□□ 0.91
CLSTN3-214ENST00000542663 KCNV1Q6PIU1 500 aa20.73■□□□□ 0.91
CLSTN3-214ENST00000542663 ZFP91Q96JP5 570 aaPredicted RBP20.73■□□□□ 0.91
CLSTN3-214ENST00000542663 TRIOO75962 3097 aa20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 H3BNC9 293 aa20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 SSTR3P32745 418 aaPredicted RBP20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 RRP1P56182 461 aaKnown RBP20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 CWC27Q6UX04 472 aaKnown RBP20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 ATP6V0A1Q93050 837 aa20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 TOP1MTQ969P6 601 aa20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 MAP3K20Q9NYL2 800 aaKnown RBP20.72■□□□□ 0.91
CLSTN3-214ENST00000542663 LOC101059915A0A1B0GWI6 518 aaPredicted RBP20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 C17orf102A2RUQ5 167 aa20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 H3BQ06 376 aaPredicted RBP20.71■□□□□ 0.91
CLSTN3-214ENST00000542663 H3BRB1 525 aa20.71■□□□□ 0.91
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms