RNA–Protein interactions for RNA: ENST00000542460.5

LIG1-204, Transcript of DNA ligase 1, humanhuman

TSL 2

Gene LIG1, Length 1,527 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-204ENST00000542460 MRVI1Q9Y6F6 885 aa19.45■□□□□ 0.7
LIG1-204ENST00000542460 TDP2O95551 362 aa19.44■□□□□ 0.7
LIG1-204ENST00000542460 BRD1O95696 1058 aa19.44■□□□□ 0.7
LIG1-204ENST00000542460 TXNP10599 105 aaKnown RBP19.44■□□□□ 0.7
LIG1-204ENST00000542460 ATP2B1P20020 1258 aa19.44■□□□□ 0.7
LIG1-204ENST00000542460 MBOAT7Q96N66 472 aa19.44■□□□□ 0.7
LIG1-204ENST00000542460 DDX25Q9UHL0 483 aaKnown RBP19.44■□□□□ 0.7
LIG1-204ENST00000542460 F13A1P00488 732 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 RGS19P49795 217 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 TOB1P50616 345 aaPredicted RBP19.43■□□□□ 0.7
LIG1-204ENST00000542460 SOX10P56693 466 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 NUCB2P80303 420 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 MLLT1Q03111 559 aaPredicted RBP19.43■□□□□ 0.7
LIG1-204ENST00000542460 TNFAIP2Q03169 654 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 TTC38Q5R3I4 469 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 FOXD4L5Q5VV16 416 aaPredicted RBP19.43■□□□□ 0.7
LIG1-204ENST00000542460 MYSM1Q5VVJ2 828 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 CCDC62Q6P9F0 684 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 FOXD4L4Q8WXT5 416 aaPredicted RBP19.43■□□□□ 0.7
LIG1-204ENST00000542460 LENG9Q96B70 501 aa19.43■□□□□ 0.7
LIG1-204ENST00000542460 DDX41Q9UJV9 622 aaKnown RBP19.43■□□□□ 0.7
LIG1-204ENST00000542460 C11orf97A0A1B0GVM6 126 aaPredicted RBP19.42■□□□□ 0.7
LIG1-204ENST00000542460 NKRFO15226 690 aaKnown RBP eCLIP19.42■□□□□ 0.7
LIG1-204ENST00000542460 MSCO60682 206 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 ARP10275 920 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 CCL5P13501 91 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 SMPD1P17405 629 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 SEMA3FQ13275 785 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 ORC2Q13416 577 aaPredicted RBP19.42■□□□□ 0.7
LIG1-204ENST00000542460 MTFR1Q15390 333 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 DUSP28Q4G0W2 176 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 SENP7Q9BQF6 1050 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 UNC93B1Q9H1C4 597 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 ZDHHC9Q9Y397 364 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 LRRC37A2A6NM11 1700 aa19.42■□□□□ 0.7
LIG1-204ENST00000542460 ARIH2O95376 493 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 LY6KQ17RY6 165 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 GIMAP8Q8ND71 665 aaPredicted RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 XRN2Q9H0D6 950 aaKnown RBP eCLIP19.41■□□□□ 0.7
LIG1-204ENST00000542460 RNF208Q9H0X6 261 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 AGO4Q9HCK5 861 aaKnown RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 DDX20Q9UHI6 824 aaKnown RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 CIZ1Q9ULV3 898 aaPredicted RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 WNT7AO00755 349 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 ADCY6O43306 1168 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 SLC37A4O43826 429 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 DUSP11O75319 330 aaKnown RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 MYCP01106 439 aaPredicted RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 MCM7P33993 719 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 SP2Q02086 613 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 NEDD9Q14511 834 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 ZNF174Q15697 407 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 TMEM63BQ5T3F8 832 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 ZNF577Q9BSK1 485 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 PAK6Q9NQU5 681 aaPredicted RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 GNEQ9Y223 722 aaKnown RBP19.41■□□□□ 0.7
LIG1-204ENST00000542460 Q9Y3F1 56 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 PCDHB6Q9Y5E3 794 aa19.41■□□□□ 0.7
LIG1-204ENST00000542460 MCM3APO60318 1980 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 MYH7BA7E2Y1 1941 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 IPO5O00410 1097 aaKnown RBP19.4■□□□□ 0.7
LIG1-204ENST00000542460 TBX3O15119 743 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 MSH4O15457 936 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 NEMFO60524 1076 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 ATP9AO75110 1047 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 RARBP10826 455 aa19.4■□□□□ 0.7
LIG1-204ENST00000542460 UBA1P22314 1058 aaKnown RBP19.4■□□□□ 0.7
LIG1-204ENST00000542460 CENPFP49454 3210 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 GH1P01241 217 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 KCNA2P16389 499 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 NBR1Q14596 966 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 FAM173BQ6P4H8 233 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 POTEDQ86YR6 584 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 DHX37Q8IY37 1157 aaKnown RBP19.39■□□□□ 0.69
LIG1-204ENST00000542460 KCNMB3Q9NPA1 279 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 EIF4ENIF1Q9NRA8 985 aaKnown RBP19.39■□□□□ 0.69
LIG1-204ENST00000542460 TBC1D22BQ9NU19 505 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 PKD2L1Q9P0L9 805 aa19.39■□□□□ 0.69
LIG1-204ENST00000542460 GGPS1O95749 300 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 CELF3Q5SZQ8 465 aaKnown RBP19.38■□□□□ 0.69
LIG1-204ENST00000542460 GJC2Q5T442 439 aaPredicted RBP19.38■□□□□ 0.69
LIG1-204ENST00000542460 ANO1Q5XXA6 986 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 LHX8Q68G74 356 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 SLFN12Q8IYM2 578 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 ETNPPLQ8TBG4 499 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 COPS5Q92905 334 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 SLC5A5Q92911 643 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 LENG1Q96BZ8 264 aaPredicted RBP19.38■□□□□ 0.69
LIG1-204ENST00000542460 FAM20AQ96MK3 541 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 SDF4Q9BRK5 362 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 MLXIPQ9HAP2 919 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 ATP6V1DQ9Y5K8 247 aa19.38■□□□□ 0.69
LIG1-204ENST00000542460 NFASCO94856 1347 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 DYNC1LI2O43237 492 aaPredicted RBP19.37■□□□□ 0.69
LIG1-204ENST00000542460 MARCH6O60337 910 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 BAG4O95429 457 aaKnown RBP19.37■□□□□ 0.69
LIG1-204ENST00000542460 ITGB3BPQ13352 177 aaPredicted RBP19.37■□□□□ 0.69
LIG1-204ENST00000542460 LAMC2Q13753 1193 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 CALCRLQ16602 461 aa19.37■□□□□ 0.69
LIG1-204ENST00000542460 METTL7BQ6UX53 244 aa19.37■□□□□ 0.69
Retrieved 100 of 20,778 RNA–protein pairs in 76.4 ms