RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 SF3A1Q15459 793 aaKnown RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 LETM2Q2VYF4 491 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 AXDND1Q5T1B0 1012 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 MAP3K21Q5TCX8 1036 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 FOXD4L5Q5VV16 416 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 ARHGEF16Q5VV41 709 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 ARL6IP4Q66PJ3 421 aaKnown RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 CCDC62Q6P9F0 684 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 ARMCX2Q7L311 632 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 PLCD3Q8N3E9 789 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 FOXD4L4Q8WXT5 416 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 SLC5A5Q92911 643 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 ZNF396Q96N95 335 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 TINF2Q9BSI4 451 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 VTA1Q9NP79 307 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 NRBP1Q9UHY1 535 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 FBXO2Q9UK22 296 aaPredicted RBP11.98□□□□□ -0.49
VPS33A-204ENST00000540669 VAV3Q9UKW4 847 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 GABRQQ9UN88 632 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 BRCA2P51587 3418 aa11.98□□□□□ -0.49
VPS33A-204ENST00000540669 FAM237AA0A1B0GTK4 181 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 ASB14A6NK59 587 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 SPATA31C2B4DYI2 1134 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 MSH4O15457 936 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 PPP6R2O75170 966 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 EIF3JO75822 258 aaKnown RBP11.97□□□□□ -0.49
VPS33A-204ENST00000540669 KCNA2P16389 499 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 FLT3LGP49771 235 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 UBXN2AP68543 259 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 GNL2Q13823 731 aaKnown RBP11.97□□□□□ -0.49
VPS33A-204ENST00000540669 IL17AQ16552 155 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 CCL14Q16627 93 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 TAPT1Q6NXT6 567 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 TRIB2Q92519 343 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 CDKN2AIPQ9NXV6 580 aaPredicted RBP11.97□□□□□ -0.49
VPS33A-204ENST00000540669 DDX25Q9UHL0 483 aaKnown RBP11.97□□□□□ -0.49
VPS33A-204ENST00000540669 CNPY2Q9Y2B0 182 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 MRVI1Q9Y6F6 885 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 ARID2Q68CP9 1835 aa11.97□□□□□ -0.49
VPS33A-204ENST00000540669 LOXHD1Q8IVV2 1947 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 NFASCO94856 1347 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 MAFGO15525 162 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 FIBPO43427 364 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 CCNT1O60563 726 aaKnown RBP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 PSMD10O75832 226 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 OR52Z1P0C646 297 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 ZNF865P0CJ78 1059 aaPredicted RBP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 CYBAP13498 195 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 FXR2P51116 673 aaKnown RBP eCLIP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 PTGDRQ13258 359 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 ITGB3BPQ13352 177 aaPredicted RBP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 STXBP2Q15833 593 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 WDR78Q5VTH9 848 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 FBXO46Q6PJ61 603 aaPredicted RBP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 OTOP1Q7RTM1 612 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 IGSF22Q8N9C0 903 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 KCNG4Q8TDN1 519 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 PXYLP1Q8TE99 480 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 FAM20AQ96MK3 541 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 SENP7Q9BQF6 1050 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 SCAND2PQ9GZW5 306 aaPredicted RBP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 AGO4Q9HCK5 861 aaKnown RBP11.96□□□□□ -0.49
VPS33A-204ENST00000540669 KCNH7Q9NS40 1196 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 CFAP45Q9UL16 551 aa11.96□□□□□ -0.49
VPS33A-204ENST00000540669 POTEFA5A3E0 1075 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 ADCY6O43306 1168 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 ARIH2O95376 493 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 ARP10275 920 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 TGFB3P10600 412 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 HOXD8P13378 290 aaPredicted RBP11.95□□□□□ -0.5
VPS33A-204ENST00000540669 MCM7P33993 719 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 NKX3-2P78367 333 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 PPP2R5CQ13362 524 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 MTMR1Q13613 665 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 ZNF174Q15697 407 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 PLA2G4DQ86XP0 818 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 TRMT44Q8IYL2 757 aaKnown RBP11.95□□□□□ -0.5
VPS33A-204ENST00000540669 EMID1Q96A84 441 aaPredicted RBP11.95□□□□□ -0.5
VPS33A-204ENST00000540669 RIT2Q99578 217 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 WDR11Q9BZH6 1224 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 MCOLN1Q9GZU1 580 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 ABHD16BQ9H3Z7 469 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 SLC5A4Q9NY91 659 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 CEP131Q9UPN4 1083 aa11.95□□□□□ -0.5
VPS33A-204ENST00000540669 SRPRBQ9Y5M8 271 aaKnown RBP11.95□□□□□ -0.5
VPS33A-204ENST00000540669 B4DLN1 442 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 SPTLC2O15270 562 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 ATP9AO75110 1047 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 UBA1P22314 1058 aaKnown RBP11.94□□□□□ -0.5
VPS33A-204ENST00000540669 GRIN1Q05586 938 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 PDE4DQ08499 809 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 CALCRLQ16602 461 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 GNPTABQ3T906 1256 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 PRR16Q569H4 304 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 DPP9Q86TI2 863 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 IFNLR1Q8IU57 520 aaPredicted RBP11.94□□□□□ -0.5
VPS33A-204ENST00000540669 FBXO16Q8IX29 292 aaPredicted RBP11.94□□□□□ -0.5
VPS33A-204ENST00000540669 ZNF579Q8NAF0 562 aaKnown RBP11.94□□□□□ -0.5
VPS33A-204ENST00000540669 TRPV1Q8NER1 839 aa11.94□□□□□ -0.5
VPS33A-204ENST00000540669 RAET1EQ8TD07 263 aa11.94□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms