RNA–Protein interactions for RNA: ENST00000539506.5

SFSWAP-208, Transcript of splicing factor SWAP, humanhuman

TSL 5

Gene SFSWAP, Length 3,149 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SFSWAP-208ENST00000539506 TRADDQ15628 312 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 SHROOM1Q2M3G4 852 aaPredicted RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 DNAAF5Q86Y56 855 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 CCDC155Q8N6L0 562 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 FAM169AQ9Y6X4 670 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 UBR3Q6ZT12 1888 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 LTBP1Q14766 1721 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 ZC3H4Q9UPT8 1303 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 BACH1O14867 736 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 GUCY2FP51841 1108 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 MNAT1P51948 309 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 CENPPQ6IPU0 288 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 PPM1EQ8WY54 764 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 NOC4LQ9BVI4 516 aaKnown RBP13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 KANSL2Q9H9L4 492 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 MYO1AQ9UBC5 1043 aa13.93□□□□□ -0.18
SFSWAP-208ENST00000539506 PLIN4Q96Q06 1357 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 UBAP1LF5GYI3 381 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 POLRMTO00411 1230 aaKnown RBP13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 MTIF2P46199 727 aaKnown RBP13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 WDR93Q6P2C0 686 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 ADGRF4Q8IZF3 695 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 PSMD14O00487 310 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 IPO7O95373 1038 aaKnown RBP13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 FXR2P51116 673 aaKnown RBP eCLIP13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 SCNN1DP51172 638 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 TADA2BQ86TJ2 420 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 ZFPM1Q8IX07 1006 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 NOC3LQ8WTT2 800 aaKnown RBP13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 HAS1Q92839 578 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 HAUS4Q9H6D7 363 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 FOCADQ5VW36 1801 aa13.92□□□□□ -0.18
SFSWAP-208ENST00000539506 MYO1FO00160 1098 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 ERLIN2O94905 339 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 SHMT1P34896 483 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 ADCY7P51828 1080 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 SEMA3FQ13275 785 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 LRRC41Q15345 812 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 SV2BQ7L1I2 683 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 C2CD5Q86YS7 1000 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 PACSIN2Q9UNF0 486 aaPredicted RBP13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 ADAMTSL1Q8N6G6 1762 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 BICDL2A1A5D9 508 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 KRT86O43790 486 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 CLK2P49760 499 aaKnown RBP13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 ARID5AQ03989 594 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 TBC1D22AQ8WUA7 517 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 LARP4BQ92615 738 aaKnown RBP13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 CALML4Q96GE6 196 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 CAPS2Q9BXY5 557 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 DEF6Q9H4E7 631 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 PCDHAC2Q9Y5I4 1007 aa13.91□□□□□ -0.18
SFSWAP-208ENST00000539506 KLRG2A4D1S0 409 aaPredicted RBP13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 EBAG9O00559 213 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 ZBED6P86452 979 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 ZNF543Q08ER8 600 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 COBLL1Q53SF7 1204 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 KCTD1Q719H9 257 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 ERGIC2Q96RQ1 377 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 FGFBP2Q9BYJ0 223 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 MMRN2Q9H8L6 949 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 KCNQ5Q9NR82 932 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 SIK3Q9Y2K2 1263 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 USP17L10C9JJH3 530 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 TNNI2P48788 182 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 EHHADHQ08426 723 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 NFIAQ12857 509 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 DOK7Q18PE1 504 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 CNNM4Q6P4Q7 775 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 SEPT12Q8IYM1 358 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 CCDC42Q96M95 316 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 GUCY1A3Q02108 690 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 KIF5AQ12840 1032 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 TUBB2AQ13885 445 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 ASPRV1Q53RT3 343 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 UNC13DQ70J99 1090 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 RAD54LQ92698 747 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 DDX12PQ92771 950 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 CRAMP1Q96RY5 1269 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 TUBB2BQ9BVA1 445 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 ZNHIT6Q9NWK9 470 aaKnown RBP13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 SALL4Q9UJQ4 1053 aa13.9□□□□□ -0.18
SFSWAP-208ENST00000539506 ATP2C2O75185 946 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 FAM153BP0C7A2 387 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 SEC24CP53992 1094 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 AMPD3Q01432 767 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 FAM153CQ494X1 144 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 SLF2Q8IX21 1173 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 SECISBP2LQ93073 1101 aaKnown RBP13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 RIC8AQ9NPQ8 531 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 USP40Q9NVE5 1235 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 ARHGAP20Q9P2F6 1191 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 FAM153AQ9UHL3 310 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 CAPN7Q9Y6W3 813 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 H0YHG0 523 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 PPEF1O14829 653 aaPredicted RBP13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 TTLL1O95922 423 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 TMEM119Q4V9L6 283 aa13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 RNF187Q5TA31 235 aaPredicted RBP13.89□□□□□ -0.19
SFSWAP-208ENST00000539506 CCDC181Q5TID7 509 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms