RNA–Protein interactions for RNA: ENST00000537178.5

CLIP1-209, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CLIP1, Length 5,229 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-209ENST00000537178 IFRD2Q12894 506 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-209ENST00000537178 TFDP1Q14186 410 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 LARP7Q4G0J3 582 aaKnown RBP eCLIP11.54□□□□□ -0.56
CLIP1-209ENST00000537178 TTBK2Q6IQ55 1244 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 TAB3Q8N5C8 712 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-209ENST00000537178 ANKRD13CQ8N6S4 541 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 PAGR1Q9BTK6 254 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 ZMYM6O95789 1325 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 SGK1O00141 431 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 IFT88Q13099 833 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 ZNF827Q17R98 1081 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 FAM160B1Q5W0V3 765 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 RFX6Q8HWS3 928 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 SPDYE1Q8NFV5 336 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-209ENST00000537178 GJA10Q969M2 543 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 KLHL29Q96CT2 875 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 GSDMAQ96QA5 445 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 RPS6KC1Q96S38 1066 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 SLC52A2Q9HAB3 445 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 PDE11AQ9HCR9 933 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 TLK1Q9UKI8 766 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 SSH2Q76I76 1423 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 TTI1O43156 1089 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 DDAH1O94760 285 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 ODR4Q5SWX8 454 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 RETREG2Q8NC44 543 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 DISC1Q9NRI5 854 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 RNF14Q9UBS8 474 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 TNKSO95271 1327 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 CPP00450 1065 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 PCP11498 1178 aaKnown RBP11.54□□□□□ -0.56
CLIP1-209ENST00000537178 PIK3CAP42336 1068 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 EXOC8Q8IYI6 725 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 IFNL3Q8IZI9 196 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 MORC4Q8TE76 937 aa11.54□□□□□ -0.56
CLIP1-209ENST00000537178 PACSIN2Q9UNF0 486 aaPredicted RBP11.54□□□□□ -0.56
CLIP1-209ENST00000537178 PPIP5K2O43314 1243 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 MSH2P43246 934 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 GTF2IP78347 998 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 MYL7Q01449 175 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 NRBF2Q96F24 287 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.53□□□□□ -0.56
CLIP1-209ENST00000537178 KCTD16Q68DU8 428 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 KRT80Q6KB66 452 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 EFCAB13Q8IY85 973 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 FAM149B1Q96BN6 582 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 TUBGCP2Q9BSJ2 902 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 KRT82Q9NSB4 513 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 NDUFB9Q9Y6M9 179 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SCINQ9Y6U3 715 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SPATA31D1Q6ZQQ2 1576 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 FAM170AA1A519 330 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SPDYE2BA6NHP3 402 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 HNRNPDLO14979 420 aaKnown RBP11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SPDYE6P0CI01 402 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SKIP12755 728 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 A0A1W2PQ27 194 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 A0A1W2PQ64 194 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 A0A1W2PQD8 194 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 BTBD18B2RXH4 712 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 ADD1P35611 737 aaKnown RBP11.53□□□□□ -0.56
CLIP1-209ENST00000537178 RASSF7Q02833 373 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 DNAJC10Q8IXB1 793 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 CCHCR1Q8TD31 782 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 PARD3BQ8TEW8 1205 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 CNOT6LQ96LI5 555 aaKnown RBP11.53□□□□□ -0.56
CLIP1-209ENST00000537178 SYNJ2BP-COX16A0A087WUM0 186 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 PGRMC1O00264 195 aaKnown RBP11.53□□□□□ -0.56
CLIP1-209ENST00000537178 LAD1O00515 517 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 MCF2LO15068 1137 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 NVLO15381 856 aaKnown RBP11.53□□□□□ -0.56
CLIP1-209ENST00000537178 ACTN1P12814 892 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 DNAAF3Q8N9W5 541 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 TCP11Q8WWU5 503 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 ATP6V0A1Q93050 837 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 TXLNGQ9NUQ3 528 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 COX16Q9P0S2 106 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 PCDHA7Q9UN72 937 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 MTMR6Q9Y217 621 aa11.53□□□□□ -0.56
CLIP1-209ENST00000537178 RIMS1Q86UR5 1692 aaKnown RBP11.52□□□□□ -0.56
CLIP1-209ENST00000537178 GSTA4O15217 222 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 MT-ND3P03897 115 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 ATP2B4P23634 1241 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 MAPK4P31152 587 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 TRAPPC10P48553 1259 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 ICA1Q05084 483 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 PTGDRQ13258 359 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 SNX1Q13596 522 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 SESTD1Q86VW0 696 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 NUDCD1Q96RS6 583 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 CNOT10Q9H9A5 744 aaKnown RBP11.52□□□□□ -0.56
CLIP1-209ENST00000537178 SCOCQ9UIL1 159 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 PCDHB4Q9Y5E5 795 aa11.52□□□□□ -0.56
CLIP1-209ENST00000537178 ECEL1O95672 775 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 GAP43P17677 238 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 ARL4AP40617 200 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 LRCH2Q5VUJ6 765 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 RPAINQ86UA6 219 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 KSR1Q8IVT5 923 aa11.52□□□□□ -0.57
CLIP1-209ENST00000537178 ZNF653Q96CK0 615 aa11.52□□□□□ -0.57
Retrieved 100 of 20,778 RNA–protein pairs in 14 ms