RNA–Protein interactions for RNA: ENST00000534556.1

USH1C-210, Transcript of USH1 protein network component harmonin, humanhuman

TSL 3

Gene USH1C, Length 244 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USH1C-210ENST00000534556 CENPBP07199 599 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 MMP3P08254 477 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 MYL3P08590 195 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 ZNF286BP0CG31 522 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 CALM1P0DP23 149 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 CALM2P0DP24 149 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 CALM3P0DP25 149 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 HOXD8P13378 290 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 ITGB5P18084 799 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 UBA1P22314 1058 aaKnown RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 ICAM3P32942 547 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 KIF5BP33176 963 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 GNAQP50148 359 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 ZNF200P98182 395 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 KRT32Q14532 448 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 PPP2R5BQ15173 497 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 GDF6Q6KF10 455 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 Q7L0L9 218 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 PCSK9Q8NBP7 692 aaKnown RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 RASGRP4Q8TDF6 673 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 DHX38Q92620 1227 aaKnown RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 EMID1Q96A84 441 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 GLT1D1Q96MS3 346 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 INPP4AQ96PE3 977 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 UIMC1Q96RL1 719 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 LZTS2Q9BRK4 669 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 NOC4LQ9BVI4 516 aaKnown RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 PPP1R12CQ9BZL4 782 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 TM6SF1Q9BZW5 370 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 UBE2OQ9C0C9 1292 aaKnown RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 AP5M1Q9H0R1 490 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 ALDH8A1Q9H2A2 487 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 GJB4Q9NTQ9 266 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 TMEM39AQ9NV64 488 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 MAP3K20Q9NYL2 800 aaKnown RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 PNMA2Q9UL42 364 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 UBIAD1Q9Y5Z9 338 aa5.84□□□□□ -1.47
USH1C-210ENST00000534556 COL4A4P53420 1690 aaPredicted RBP5.84□□□□□ -1.47
USH1C-210ENST00000534556 GSTTP1A0A1W2PQM5 241 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 NKRFO15226 690 aaKnown RBP eCLIP5.83□□□□□ -1.48
USH1C-210ENST00000534556 EPB41L2O43491 1005 aaKnown RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 TIMP1P01033 207 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 GH1P01241 217 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 ARP10275 920 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 ACRP10323 421 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 CSF2RAP15509 400 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 KCNA2P16389 499 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 CCND2P30279 289 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 METAP2P50579 478 aaKnown RBP eCLIP5.83□□□□□ -1.48
USH1C-210ENST00000534556 STK3Q13188 491 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 TTLL4Q14679 1199 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 PFKFB3Q16875 520 aaPredicted RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 TRIM71Q2Q1W2 868 aaKnown RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 TMEM240Q5SV17 173 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 CELF3Q5SZQ8 465 aaKnown RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 PCNX4Q63HM2 1172 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 MFSD5Q6N075 450 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 TRAF7Q6Q0C0 670 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 HEATR3Q7Z4Q2 680 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 TRIM50Q86XT4 487 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 TDHQ8IZJ6 230 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 SAMD3Q8N6K7 520 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 VTI1AQ96AJ9 217 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 SCLYQ96I15 445 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 PCYT2Q99447 389 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 BUD13Q9BRD0 619 aaKnown RBP eCLIP5.83□□□□□ -1.48
USH1C-210ENST00000534556 C16orf70Q9BSU1 422 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 MTG1Q9BT17 334 aaPredicted RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 PSTPIP2Q9H939 334 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 SPC25Q9HBM1 224 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 RIC8AQ9NPQ8 531 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 POLR3EQ9NVU0 708 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 RBM28Q9NW13 759 aaKnown RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 BARHL2Q9NY43 387 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 HDAC6Q9UBN7 1215 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 TPCN1Q9ULQ1 816 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 NAP1L2Q9ULW6 460 aaPredicted RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 PCDHA6Q9UN73 950 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 PCDHA8Q9Y5H6 950 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 MRVI1Q9Y6F6 885 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 MYO7AQ13402 2215 aa5.83□□□□□ -1.48
USH1C-210ENST00000534556 FNDC1Q4ZHG4 1894 aaPredicted RBP5.83□□□□□ -1.48
USH1C-210ENST00000534556 TTC3P53804 2025 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 BRWD1Q9NSI6 2320 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 COL4A6Q14031 1691 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 IGLV3-22A0A075B6J6 115 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 A0A1W2PPC1 479 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 SMCO2A6NFE2 343 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 GRXCR1A8MXD5 290 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 DCDC2CA8MYV0 355 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 M0R2N6 131 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 PRPF3O43395 683 aaKnown RBP5.82□□□□□ -1.48
USH1C-210ENST00000534556 F2P00734 622 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 HMGB1P09429 215 aaKnown RBP5.82□□□□□ -1.48
USH1C-210ENST00000534556 SCG2P13521 617 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 FDPSP14324 419 aaKnown RBP5.82□□□□□ -1.48
USH1C-210ENST00000534556 RAG1P15918 1043 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 IFNAR1P17181 557 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 HOXC8P31273 242 aa5.82□□□□□ -1.48
USH1C-210ENST00000534556 PSEN2P49810 448 aa5.82□□□□□ -1.48
Retrieved 100 of 20,778 RNA–protein pairs in 39.9 ms