RNA–Protein interactions for RNA: ENST00000534296.5

CD44-238, Transcript of CD44 molecule (Indian blood group), human

TSL 3

Gene CD44, Length 863 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CD44-238	ENST00000534296	SPATC1	Q76KD6	591 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	MIB1	Q86YT6	1006 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	FAM126B	Q8IXS8	530 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	TMEFF1	Q8IYR6	380 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	OSBP2	Q969R2	916 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	DRC1	Q96MC2	740 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	WRNIP1	Q96S55	665 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	OSBPL2	Q9H1P3	480 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	SNTG2	Q9NY99	539 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	NTM	Q9P121	344 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	MYOT	Q9UBF9	498 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	SIT1	Q9Y3P8	196 aa		4.23	□□□□□ -1.73
CD44-238	ENST00000534296	ARID1B	Q8NFD5	2236 aa	Predicted RBP	4.22	□□□□□ -1.73
CD44-238	ENST00000534296	CCDC163	A0A0D9SF12	145 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	GSTA4	O15217	222 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	SGSM2	O43147	1006 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	CYP7B1	O75881	506 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	CAPNS1	P04632	268 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	ATF2	P15336	505 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	MC3R	P41968	323 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	GABRE	P78334	506 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	RASA3	Q14644	834 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	EMC4	Q5J8M3	183 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	DENND5A	Q6IQ26	1287 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	LBX2	Q6XYB7	198 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	TTLL6	Q8N841	843 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	ZSWIM2	Q8NEG5	633 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	4.22	□□□□□ -1.73
CD44-238	ENST00000534296	UBXN4	Q92575	508 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	PTPRN2	Q92932	1015 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	TOE1	Q96GM8	510 aa	Known RBP	4.22	□□□□□ -1.73
CD44-238	ENST00000534296	MRFAP1L1	Q96HT8	127 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	DNAJC2	Q99543	621 aa	Known RBP	4.22	□□□□□ -1.73
CD44-238	ENST00000534296	SMOC1	Q9H4F8	434 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	BCAS3	Q9H6U6	928 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	LUC7L	Q9NQ29	371 aa	Known RBP	4.22	□□□□□ -1.73
CD44-238	ENST00000534296	RAPGEFL1	Q9UHV5	662 aa		4.22	□□□□□ -1.73
CD44-238	ENST00000534296	EFCAB14	O75071	495 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	SOD2	P04179	222 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	PAK1	Q13153	545 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	YOD1	Q5VVQ6	348 aa	Predicted RBP	4.21	□□□□□ -1.74
CD44-238	ENST00000534296	FNIP1	Q8TF40	1166 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	THAP3	Q8WTV1	239 aa	Predicted RBP	4.21	□□□□□ -1.74
CD44-238	ENST00000534296	ZBTB8A	Q96BR9	441 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	DHRS4	Q9BTZ2	278 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	EPB41L4A	Q9HCS5	686 aa	Predicted RBP	4.21	□□□□□ -1.74
CD44-238	ENST00000534296	SLC6A20	Q9NP91	592 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	PARD6A	Q9NPB6	346 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	USP40	Q9NVE5	1235 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	DTL	Q9NZJ0	730 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	FBXL7	Q9UJT9	491 aa		4.21	□□□□□ -1.74
CD44-238	ENST00000534296	ADCY3	O60266	1144 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	DIAPH1	O60610	1272 aa	Known RBP	4.2	□□□□□ -1.74
CD44-238	ENST00000534296	C8B	P07358	591 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	INHBB	P09529	407 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	KCNC1	P48547	511 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	GJA9	P57773	515 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	ST5	P78524	1137 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	HTRA3	P83110	453 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	GUCY1A3	Q02108	690 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	FAM47C	Q5HY64	1035 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	KCNT2	Q6UVM3	1135 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	OTOP3	Q7RTS5	596 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	SAPCD2	Q86UD0	394 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	FAM124A	Q86V42	546 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	KY	Q8NBH2	561 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	PIP4K2C	Q8TBX8	421 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	CLIC6	Q96NY7	704 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	TMEM209	Q96SK2	561 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	DNAJC7	Q99615	494 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	KCNJ15	Q99712	375 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	JAM3	Q9BX67	310 aa		4.2	□□□□□ -1.74
CD44-238	ENST00000534296	MRPS23	Q9Y3D9	190 aa	Known RBP	4.2	□□□□□ -1.74
CD44-238	ENST00000534296	TCRBV5S2	A0A599	114 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	BLACE	A4D250	179 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	SH3D21	A4FU49	640 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	ARNTL	O00327	626 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	MSC	O60682	206 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	TADA3	O75528	432 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	SARS	P49591	514 aa	Known RBP	4.19	□□□□□ -1.74
CD44-238	ENST00000534296	NTRK3	Q16288	839 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	FAM209A	Q5JX71	171 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	LIPI	Q6XZB0	460 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	NLGN4X	Q8N0W4	816 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	MARCH10	Q8NA82	808 aa	Predicted RBP	4.19	□□□□□ -1.74
CD44-238	ENST00000534296	TTLL11	Q8NHH1	800 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	ASH2L	Q9UBL3	628 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	SFMBT1	Q9UHJ3	866 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	DSE	Q9UL01	958 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	PLA2G2D	Q9UNK4	145 aa		4.19	□□□□□ -1.74
CD44-238	ENST00000534296	FAM221B	A6H8Z2	402 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	FFAR3	O14843	346 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	TRIM13	O60858	407 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	PLA2G1B	P04054	148 aa	Known RBP	4.18	□□□□□ -1.74
CD44-238	ENST00000534296	FAM153B	P0C7A2	387 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	STAT5A	P42229	794 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	CTSW	P56202	376 aa		4.18	□□□□□ -1.74
CD44-238	ENST00000534296	SMAD4	Q13485	552 aa	Known RBP	4.18	□□□□□ -1.74
CD44-238	ENST00000534296	BMS1	Q14692	1282 aa	Known RBP	4.18	□□□□□ -1.74
CD44-238	ENST00000534296	VMAC	Q2NL98	169 aa		4.18	□□□□□ -1.74

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