RNA–Protein interactions for RNA: ENST00000532737.1

USP48-214, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 4

Gene USP48, Length 680 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-214ENST00000532737 NLRX1Q86UT6 975 aa28.31■■■□□ 2.12
USP48-214ENST00000532737 CYP2W1Q8TAV3 490 aa28.31■■■□□ 2.12
USP48-214ENST00000532737 C8orf76Q96K31 380 aa28.31■■■□□ 2.12
USP48-214ENST00000532737 SPC25Q9HBM1 224 aa28.31■■■□□ 2.12
USP48-214ENST00000532737 JADE2Q9NQC1 790 aa28.31■■■□□ 2.12
USP48-214ENST00000532737 K7ELQ4 463 aaPredicted RBP28.3■■■□□ 2.12
USP48-214ENST00000532737 FIBPO43427 364 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 EDIL3O43854 480 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 MMP1P03956 469 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 CYP3A4P08684 503 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 TGFB3P10600 412 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 BEX3Q00994 111 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 OR6J1Q8NGC5 347 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 MXRA8Q9BRK3 442 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 ALPK3Q96L96 1907 aa28.3■■■□□ 2.12
USP48-214ENST00000532737 CST5P28325 142 aaPredicted RBP28.29■■■□□ 2.12
USP48-214ENST00000532737 KRT2P35908 639 aa28.29■■■□□ 2.12
USP48-214ENST00000532737 ARHGAP1Q07960 439 aa28.29■■■□□ 2.12
USP48-214ENST00000532737 GNASQ5JWF2 1037 aa28.29■■■□□ 2.12
USP48-214ENST00000532737 CCSAPQ6IQ19 270 aaPredicted RBP28.29■■■□□ 2.12
USP48-214ENST00000532737 GPRASP2Q96D09 838 aa28.29■■■□□ 2.12
USP48-214ENST00000532737 KIAA1217Q5T5P2 1943 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 KBTBD13C9JR72 458 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 GH1P01241 217 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 COL6A1P12109 1028 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 UBA1P22314 1058 aaKnown RBP28.28■■■□□ 2.12
USP48-214ENST00000532737 GJB2P29033 226 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 ZNF76P36508 570 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 NR5A1Q13285 461 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 KCNA10Q16322 511 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 FSCN1Q16658 493 aaKnown RBP28.28■■■□□ 2.12
USP48-214ENST00000532737 CEP55Q53EZ4 464 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 KRT25Q7Z3Z0 450 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 DIS3L2Q8IYB7 885 aaKnown RBP28.28■■■□□ 2.12
USP48-214ENST00000532737 FBXO18Q8NFZ0 1043 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 TBCKQ8TEA7 893 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 BCAS3Q9H6U6 928 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 SMC3Q9UQE7 1217 aa28.28■■■□□ 2.12
USP48-214ENST00000532737 ZSCAN21Q9Y5A6 473 aaPredicted RBP28.28■■■□□ 2.12
USP48-214ENST00000532737 BTBD18B2RXH4 712 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 FAM86B1E9PN63 330 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 MEIS1O00470 390 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 FAM86B2P0C5J1 330 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 MTMR1Q13613 665 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 EARS2Q5JPH6 523 aaKnown RBP28.27■■■□□ 2.12
USP48-214ENST00000532737 NECAB2Q7Z6G3 386 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 TNFRSF25Q93038 417 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 BRMS1Q9HCU9 246 aa28.27■■■□□ 2.12
USP48-214ENST00000532737 RANBP2P49792 3224 aaKnown RBP28.27■■■□□ 2.12
USP48-214ENST00000532737 CCDC194A0A1B0GVG4 234 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 SORBS3O60504 671 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 ATP9AO75110 1047 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 GGPS1O95749 300 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 NONOQ15233 471 aaKnown RBP eCLIP28.26■■■□□ 2.113e-6■■■■□ 21.1
USP48-214ENST00000532737 CELF3Q5SZQ8 465 aaKnown RBP28.26■■■□□ 2.11
USP48-214ENST00000532737 DHX37Q8IY37 1157 aaKnown RBP28.26■■■□□ 2.11
USP48-214ENST00000532737 DPF3Q92784 378 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 TSEN34Q9BSV6 310 aaKnown RBP28.26■■■□□ 2.11
USP48-214ENST00000532737 C11orf49Q9H6J7 331 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 PHF24Q9UPV7 400 aa28.26■■■□□ 2.11
USP48-214ENST00000532737 ARP10275 920 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 CIITAP33076 1130 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 USP11P51784 963 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 ACLYP53396 1101 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 INF2Q27J81 1249 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 MYSM1Q5VVJ2 828 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 PCSK9Q8NBP7 692 aaKnown RBP28.25■■■□□ 2.11
USP48-214ENST00000532737 AFG1LQ8WV93 481 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 FERMT2Q96AC1 680 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 CDHR1Q96JP9 859 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 KCNH7Q9NS40 1196 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 KIF3AQ9Y496 699 aa28.25■■■□□ 2.11
USP48-214ENST00000532737 IGLV3-22A0A075B6J6 115 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 FAM205CA6NFA0 338 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 A6NJR5 290 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 MAFGO15525 162 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 LAMC2Q13753 1193 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 PIK3AP1Q6ZUJ8 805 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 NIPA1Q7RTP0 329 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 HSCBQ8IWL3 235 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 EMID1Q96A84 441 aaPredicted RBP28.24■■■□□ 2.11
USP48-214ENST00000532737 SENP7Q9BQF6 1050 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 HTATIP2Q9BUP3 242 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 SENP6Q9GZR1 1112 aaPredicted RBP28.24■■■□□ 2.11
USP48-214ENST00000532737 PKD2L1Q9P0L9 805 aa28.24■■■□□ 2.11
USP48-214ENST00000532737 ASGR1P07306 291 aa28.23■■■□□ 2.11
USP48-214ENST00000532737 KCNA2P16389 499 aa28.23■■■□□ 2.11
USP48-214ENST00000532737 NEDD9Q14511 834 aa28.23■■■□□ 2.11
USP48-214ENST00000532737 SAFBQ15424 915 aaKnown RBP eCLIP28.23■■■□□ 2.11
USP48-214ENST00000532737 PLA2G4DQ86XP0 818 aa28.23■■■□□ 2.11
USP48-214ENST00000532737 MOXD2PA6NHM9 499 aa28.22■■■□□ 2.11
USP48-214ENST00000532737 CPT1AP50416 773 aa28.22■■■□□ 2.11
USP48-214ENST00000532737 CHRDL2Q6WN34 429 aa28.22■■■□□ 2.11
USP48-214ENST00000532737 CYFIP1Q7L576 1253 aa28.22■■■□□ 2.11
USP48-214ENST00000532737 MLXIPQ9HAP2 919 aa28.22■■■□□ 2.11
USP48-214ENST00000532737 AGO4Q9HCK5 861 aaKnown RBP28.22■■■□□ 2.11
USP48-214ENST00000532737 TDP2O95551 362 aa28.21■■■□□ 2.11
USP48-214ENST00000532737 PRR16Q569H4 304 aa28.21■■■□□ 2.11
USP48-214ENST00000532737 CXCL17Q6UXB2 119 aa28.21■■■□□ 2.11
USP48-214ENST00000532737 LENG9Q96B70 501 aa28.21■■■□□ 2.11
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms