RNA–Protein interactions for RNA: ENST00000532725.1

CPSF1-209, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

TSL 2

Gene CPSF1, Length 597 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-209ENST00000532725 CDK7P50613 346 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 CELF3Q5SZQ8 465 aaKnown RBP22.72■■□□□ 1.23
CPSF1-209ENST00000532725 MCTP2Q6DN12 878 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 DHX37Q8IY37 1157 aaKnown RBP22.72■■□□□ 1.23
CPSF1-209ENST00000532725 C7orf61Q8IZ16 206 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 FAM177A1Q8N128 213 aaPredicted RBP22.72■■□□□ 1.23
CPSF1-209ENST00000532725 IL27Q8NEV9 243 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 BICD2Q8TD16 824 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 AFG1LQ8WV93 481 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 VTI1AQ96AJ9 217 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 ZSCAN31Q96LW9 406 aaPredicted RBP22.72■■□□□ 1.23
CPSF1-209ENST00000532725 BCAS3Q9H6U6 928 aa22.72■■□□□ 1.23
CPSF1-209ENST00000532725 FIBPO43427 364 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 UBA1P22314 1058 aaKnown RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 SREBF1P36956 1147 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 NLRP5P59047 1200 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 PURAQ00577 322 aaKnown RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 TRIM60Q495X7 471 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 BRDTQ58F21 947 aaPredicted RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 PRPF38BQ5VTL8 546 aaKnown RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 NLRX1Q86UT6 975 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 REXO1Q8N1G1 1221 aaKnown RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 NSUN7Q8NE18 718 aaKnown RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 CRYGNQ8WXF5 182 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 GPRASP2Q96D09 838 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 JADE2Q9NQC1 790 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 POLR3EQ9NVU0 708 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 ORC3Q9UBD5 711 aaPredicted RBP22.71■■□□□ 1.23
CPSF1-209ENST00000532725 ATP11BQ9Y2G3 1177 aa22.71■■□□□ 1.23
CPSF1-209ENST00000532725 KPNA6O60684 536 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 GGPS1O95749 300 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 TLE2Q04725 743 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 NPY5RQ15761 445 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 SLC43A3Q8NBI5 491 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 CYP2W1Q8TAV3 490 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 SENP7Q9BQF6 1050 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 PCDHA4Q9UN74 947 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 GRIN2DO15399 1336 aa22.7■■□□□ 1.22
CPSF1-209ENST00000532725 A0A0U1RQG5 324 aaPredicted RBP22.69■■□□□ 1.22
CPSF1-209ENST00000532725 M0R2N6 131 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 ARVCFO00192 962 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 MAFGO15525 162 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 ATP9AO75110 1047 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 MMP3P08254 477 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 MYL3P08590 195 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 CYP3A4P08684 503 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 NEDD9Q14511 834 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 GALNT17Q6IS24 598 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 ANKRD33Q7Z3H0 272 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 PPTC7Q8NI37 304 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 RASGRP4Q8TDF6 673 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 TOX2Q96NM4 488 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 MXRA8Q9BRK3 442 aa22.69■■□□□ 1.22
CPSF1-209ENST00000532725 ARHGAP4P98171 946 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 ITGA7Q13683 1181 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 DAGLBQ8NCG7 672 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 CDHR1Q96JP9 859 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 MTG1Q9BT17 334 aaPredicted RBP22.68■■□□□ 1.22
CPSF1-209ENST00000532725 PHF20Q9BVI0 1012 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 MLXIPQ9HAP2 919 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 SH2B1Q9NRF2 756 aaPredicted RBP22.68■■□□□ 1.22
CPSF1-209ENST00000532725 GJB4Q9NTQ9 266 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 KCNJ14Q9UNX9 436 aa22.68■■□□□ 1.22
CPSF1-209ENST00000532725 MEIS1O00470 390 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 EDIL3O43854 480 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 SORBS3O60504 671 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 JAK2O60674 1132 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 PPFIA4O75335 1185 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 HOXD8P13378 290 aaPredicted RBP22.67■■□□□ 1.22
CPSF1-209ENST00000532725 PSMC6P62333 389 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 HSDL1Q3SXM5 330 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 CEP55Q53EZ4 464 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 CYFIP1Q7L576 1253 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 CCDC83Q8IWF9 413 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 BLIDQ8IZY5 108 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 WASF1Q92558 559 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 SPATA33Q96N06 139 aa22.67■■□□□ 1.22
CPSF1-209ENST00000532725 ZMYND8Q9ULU4 1186 aaPredicted RBP22.67■■□□□ 1.22
CPSF1-209ENST00000532725 ST18O60284 1047 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 KCNA2P16389 499 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 MTMR1Q13613 665 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 DGKDQ16760 1214 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 METTL7BQ6UX53 244 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 LLPHQ9BRT6 129 aaKnown RBP22.66■■□□□ 1.22
CPSF1-209ENST00000532725 ALG1Q9BT22 464 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 SEZ6LQ9BYH1 1024 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 KCNH7Q9NS40 1196 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 MYH7BA7E2Y1 1941 aa22.66■■□□□ 1.22
CPSF1-209ENST00000532725 FAM86B1E9PN63 330 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 PQBP1O60828 265 aaKnown RBP22.65■■□□□ 1.22
CPSF1-209ENST00000532725 FAM86B2P0C5J1 330 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 ARP10275 920 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 SYN1P17600 705 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 XBP1P17861 261 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 FAAP100Q0VG06 881 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 NIPA1Q7RTP0 329 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 GIMAP8Q8ND71 665 aaPredicted RBP22.65■■□□□ 1.22
CPSF1-209ENST00000532725 KAT2BQ92831 832 aa22.65■■□□□ 1.22
CPSF1-209ENST00000532725 CD2BP2O95400 341 aaKnown RBP22.64■■□□□ 1.21
CPSF1-209ENST00000532725 CIITAP33076 1130 aa22.64■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms