RNA–Protein interactions for RNA: ENST00000528336.1

PCF11-202, Transcript of PCF11, cleavage and polyadenylation factor subunit, humanhuman

TSL 5

Gene PCF11, Length 1,041 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11-202ENST00000528336 CDR1P51861 262 aa8.42□□□□□ -1.06
PCF11-202ENST00000528336 ST5P78524 1137 aa8.42□□□□□ -1.06
PCF11-202ENST00000528336 SPIRE1Q08AE8 756 aa8.42□□□□□ -1.06
PCF11-202ENST00000528336 CHRNA2Q15822 529 aa8.42□□□□□ -1.06
PCF11-202ENST00000528336 POU5F2Q8N7G0 328 aa8.42□□□□□ -1.06
PCF11-202ENST00000528336 TSPAN17Q96FV3 270 aa8.42□□□□□ -1.06
PCF11-202ENST00000528336 TCRBV16S1A1N1A0A5B0 115 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 NKRFO15226 690 aaKnown RBP eCLIP8.41□□□□□ -1.06
PCF11-202ENST00000528336 SEMA7AO75326 666 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 SDSP20132 328 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 EPHB3P54753 998 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 OTOP3Q7RTS5 596 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 RBM12BQ8IXT5 1001 aaKnown RBP8.41□□□□□ -1.06
PCF11-202ENST00000528336 GCM1Q9NP62 436 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 SLC6A20Q9NP91 592 aa8.41□□□□□ -1.06
PCF11-202ENST00000528336 ENPP3O14638 875 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 SMARCA5O60264 1052 aaPredicted RBP8.4□□□□□ -1.06
PCF11-202ENST00000528336 PMLP29590 882 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 TXKP42681 527 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 OSTM1Q86WC4 334 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 MZB1Q8WU39 189 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 COQ6Q9Y2Z9 468 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 PCDHB4Q9Y5E5 795 aa8.4□□□□□ -1.06
PCF11-202ENST00000528336 TNPO3Q9Y5L0 923 aaKnown RBP8.4□□□□□ -1.06
PCF11-202ENST00000528336 CCDC66A2RUB6 948 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 NFIBO00712 420 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 SLC27A2O14975 620 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 OPA1O60313 960 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 TADA3O75528 432 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 RFPL3O75679 317 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 DNAJC8O75937 253 aaPredicted RBP8.39□□□□□ -1.07
PCF11-202ENST00000528336 ASGR2P07307 311 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 HMGB1P09429 215 aaKnown RBP8.39□□□□□ -1.07
PCF11-202ENST00000528336 KRT15P19012 456 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 ZNF124Q15973 351 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 FAM47CQ5HY64 1035 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 ATG14Q6ZNE5 492 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 C16orf59Q7L2K0 433 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 DHX37Q8IY37 1157 aaKnown RBP8.39□□□□□ -1.07
PCF11-202ENST00000528336 FEZ1Q99689 392 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 SMOC1Q9H4F8 434 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 MYOTQ9UBF9 498 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 DSEQ9UL01 958 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 CBLCQ9ULV8 474 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 PCDHA5Q9Y5H7 936 aa8.39□□□□□ -1.07
PCF11-202ENST00000528336 GSTA4O15217 222 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 MAFKO60675 156 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 C1QTNF9P0C862 333 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 PDE6AP16499 860 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 TARBP2Q15633 366 aaKnown RBP8.38□□□□□ -1.07
PCF11-202ENST00000528336 CRY1Q16526 586 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 EMC4Q5J8M3 183 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 ABHD17CQ6PCB6 329 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 CISD2Q8N5K1 135 aaKnown RBP8.38□□□□□ -1.07
PCF11-202ENST00000528336 ARRDC4Q8NCT1 418 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 PPP1R16BQ96T49 567 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 YIPF4Q9BSR8 244 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 ZNF652Q9Y2D9 606 aa8.38□□□□□ -1.07
PCF11-202ENST00000528336 IRS2Q9Y4H2 1338 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 TCRBV5S2A0A599 114 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 TCAF2A6NFQ2 919 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 IRS4O14654 1257 aaPredicted RBP8.37□□□□□ -1.07
PCF11-202ENST00000528336 WNT9AO14904 365 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 N4BP3O15049 544 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 BUB1BO60566 1050 aaPredicted RBP8.37□□□□□ -1.07
PCF11-202ENST00000528336 CKMP06732 381 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 NCAM1P13591 858 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 KCNA6P17658 529 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 PFKLP17858 780 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 HSD3B2P26439 372 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 MC3RP41968 323 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 GRIN1Q05586 938 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 ZNF460Q14592 562 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 PKN1Q16512 942 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 ARHGAP36Q6ZRI8 547 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 KIAA0907Q7Z7F0 614 aaPredicted RBP8.37□□□□□ -1.07
PCF11-202ENST00000528336 IGDCC3Q8IVU1 814 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 IGSF22Q8N9C0 903 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 NINJ1Q92982 152 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 CD244Q9BZW8 370 aa8.37□□□□□ -1.07
PCF11-202ENST00000528336 TCRBV5S4A2TA0A5A2 114 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 KCNK3O14649 394 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 LTFP02788 710 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 KRT1P04264 644 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 ASLP04424 464 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 ATF2P15336 505 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 FBLN1P23142 703 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 GLDCP23378 1020 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 IGFALSP35858 605 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 JAM2P57087 298 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 TUSC3Q13454 348 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 GPR19Q15760 415 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 PLEKHG4Q58EX7 1191 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 DALRD3Q5D0E6 543 aaKnown RBP8.36□□□□□ -1.07
PCF11-202ENST00000528336 HABP4Q5JVS0 413 aaKnown RBP8.36□□□□□ -1.07
PCF11-202ENST00000528336 CNNM4Q6P4Q7 775 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 EP400NLQ6ZTU2 488 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 AMIGO3Q86WK7 504 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 NIM1KQ8IY84 436 aa8.36□□□□□ -1.07
PCF11-202ENST00000528336 UHMK1Q8TAS1 419 aaKnown RBP8.36□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms