RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 POLR3EQ9NVU0 708 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 PRKAG2Q9UGJ0 569 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 MRVI1Q9Y6F6 885 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 MROH7Q68CQ1 1323 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 TANC1Q9C0D5 1861 aa12.29□□□□□ -0.44
CD44-227ENST00000528086 B4DLN1 442 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 EPB41L2O43491 1005 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 ZEB2O60315 1214 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 DTNBO60941 627 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 ATP9AO75110 1047 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 REC8O95072 547 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 GGPS1O95749 300 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 HMGB1P09429 215 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 ZNF286BP0CG31 522 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 ACRP10323 421 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 ITGB5P18084 799 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 CASTP20810 708 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 PDIA3P30101 505 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 CCND2P30279 289 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 MRPL12P52815 198 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 RCAN1P53805 252 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 PCNX4Q63HM2 1172 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 GDF6Q6KF10 455 aaPredicted RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 HEATR3Q7Z4Q2 680 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 PPTC7Q8NI37 304 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 CYP2W1Q8TAV3 490 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 PGBD1Q96JS3 809 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 C16orf70Q9BSU1 422 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 PSTPIP2Q9H939 334 aa12.28□□□□□ -0.44
CD44-227ENST00000528086 NCOA5Q9HCD5 579 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 RBM28Q9NW13 759 aaKnown RBP12.28□□□□□ -0.44
CD44-227ENST00000528086 F2P00734 622 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 CLK2P49760 499 aaKnown RBP12.27□□□□□ -0.45
CD44-227ENST00000528086 ZNF200P98182 395 aaPredicted RBP12.27□□□□□ -0.45
CD44-227ENST00000528086 FPGSQ05932 587 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 TRAF1Q13077 416 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 NFRKBQ6P4R8 1299 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 TRAF7Q6Q0C0 670 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 RUFY3Q7L099 469 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 SESTD1Q86VW0 696 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 CRYGNQ8WXF5 182 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 IL17RAQ96F46 866 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 MPHOSPH6Q99547 160 aaKnown RBP12.27□□□□□ -0.45
CD44-227ENST00000528086 UPF3BQ9BZI7 483 aaKnown RBP12.27□□□□□ -0.45
CD44-227ENST00000528086 HIPK3Q9H422 1215 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 TMEM260Q9NX78 707 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 BARHL2Q9NY43 387 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 CXXC1Q9P0U4 656 aaPredicted RBP12.27□□□□□ -0.45
CD44-227ENST00000528086 SEC63Q9UGP8 760 aaKnown RBP12.27□□□□□ -0.45
CD44-227ENST00000528086 PCDHA6Q9UN73 950 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 PCDHA8Q9Y5H6 950 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 UBIAD1Q9Y5Z9 338 aa12.27□□□□□ -0.45
CD44-227ENST00000528086 PRUNE2Q8WUY3 3088 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 KPNA6O60684 536 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 TGFB3P10600 412 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 KCNA2P16389 499 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 CCL23P55773 120 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 LAMC2Q13753 1193 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 PFKFB3Q16875 520 aaPredicted RBP12.26□□□□□ -0.45
CD44-227ENST00000528086 TCTN1Q2MV58 587 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 DHX37Q8IY37 1157 aaKnown RBP12.26□□□□□ -0.45
CD44-227ENST00000528086 SMARCC2Q8TAQ2 1214 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 PHKBQ93100 1093 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 SCLYQ96I15 445 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 TM6SF1Q9BZW5 370 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 RIC8AQ9NPQ8 531 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 MTMR10Q9NXD2 777 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 HDAC6Q9UBN7 1215 aa12.26□□□□□ -0.45
CD44-227ENST00000528086 WDR81Q562E7 1941 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 GRXCR1A8MXD5 290 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 PRPF3O43395 683 aaKnown RBP12.25□□□□□ -0.45
CD44-227ENST00000528086 HOXC8P31273 242 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 PSEN2P49810 448 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 METAP2P50579 478 aaKnown RBP eCLIP12.25□□□□□ -0.45
CD44-227ENST00000528086 DGKDQ16760 1214 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 TRIM71Q2Q1W2 868 aaKnown RBP12.25□□□□□ -0.45
CD44-227ENST00000528086 GPR153Q6NV75 609 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 SYNE3Q6ZMZ3 975 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 ZNF365Q70YC5 407 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 CYFIP1Q7L576 1253 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 TRIM50Q86XT4 487 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 SPATA33Q96N06 139 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 GPR20Q99678 358 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 OSBPL7Q9BZF2 842 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 TTYH1Q9H313 450 aaPredicted RBP12.25□□□□□ -0.45
CD44-227ENST00000528086 MYO9BQ13459 2157 aa12.25□□□□□ -0.45
CD44-227ENST00000528086 GSTTP1A0A1W2PQM5 241 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 TLR3O15455 904 aaKnown RBP12.24□□□□□ -0.45
CD44-227ENST00000528086 FIBPO43427 364 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 REV3LO60673 3130 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 PPFIA4O75335 1185 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 ARP10275 920 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 SCG2P13521 617 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 SIP14410 1827 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 CCT2P78371 535 aaKnown RBP12.24□□□□□ -0.45
CD44-227ENST00000528086 PTPN11Q06124 597 aaPredicted RBP12.24□□□□□ -0.45
CD44-227ENST00000528086 MFSD10Q14728 455 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 NPY5RQ15761 445 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 KCNV1Q6PIU1 500 aa12.24□□□□□ -0.45
CD44-227ENST00000528086 METTL7BQ6UX53 244 aa12.24□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 13.5 ms