RNA–Protein interactions for RNA: ENST00000525348.1

CD44-217, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 568 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-217ENST00000525348 GPR85P60893 370 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 RBM10P98175 930 aaKnown RBP6.25□□□□□ -1.41
CD44-217ENST00000525348 CAP1Q01518 475 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 STEAP3Q658P3 488 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 ETV3LQ6ZN32 361 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 FAM126BQ8IXS8 530 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 MARCH10Q8NA82 808 aaPredicted RBP6.25□□□□□ -1.41
CD44-217ENST00000525348 ARRDC4Q8NCT1 418 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 ZNF526Q8TF50 670 aaPredicted RBP6.25□□□□□ -1.41
CD44-217ENST00000525348 MKL1Q969V6 931 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 SRPK1Q96SB4 655 aaKnown RBP6.25□□□□□ -1.41
CD44-217ENST00000525348 GORASP1Q9BQQ3 440 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 EPB41L1Q9H4G0 881 aa6.25□□□□□ -1.41
CD44-217ENST00000525348 HGSO14964 777 aaPredicted RBP6.24□□□□□ -1.41
CD44-217ENST00000525348 INHBBP09529 407 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 CR1LQ2VPA4 569 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 TTLL10Q6ZVT0 673 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 SAPCD2Q86UD0 394 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 SCUBE1Q8IWY4 988 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 LINC01356Q8N9X3 169 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 SYT8Q8NBV8 401 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 PIP4K2CQ8TBX8 421 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 ZFYVE21Q9BQ24 234 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 SPATA6Q9NWH7 488 aaPredicted RBP6.24□□□□□ -1.41
CD44-217ENST00000525348 PCDHB4Q9Y5E5 795 aa6.24□□□□□ -1.41
CD44-217ENST00000525348 DGKIO75912 1065 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 GRK2P25098 689 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 GRK3P35626 688 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 KIZQ2M2Z5 673 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 NPM2Q86SE8 214 aaKnown RBP6.23□□□□□ -1.41
CD44-217ENST00000525348 STK32CQ86UX6 486 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 RBM12BQ8IXT5 1001 aaKnown RBP6.23□□□□□ -1.41
CD44-217ENST00000525348 IFNL3Q8IZI9 196 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 PUM2Q8TB72 1066 aaKnown RBP eCLIP6.23□□□□□ -1.41
CD44-217ENST00000525348 KISS1RQ969F8 398 aaPredicted RBP6.23□□□□□ -1.41
CD44-217ENST00000525348 CDC6Q99741 560 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 OSBPL2Q9H1P3 480 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 IPPKQ9H8X2 491 aa6.23□□□□□ -1.41
CD44-217ENST00000525348 KRTAP9-7A8MTY7 169 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 SOD2P04179 222 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 CYP2C8P10632 490 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 COL6A2P12110 1019 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 SUMO1P63165 101 aaKnown RBP6.22□□□□□ -1.41
CD44-217ENST00000525348 SMAD4Q13485 552 aaKnown RBP6.22□□□□□ -1.41
CD44-217ENST00000525348 HABP4Q5JVS0 413 aaKnown RBP6.22□□□□□ -1.41
CD44-217ENST00000525348 CD300LDQ6UXZ3 194 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 LIPIQ6XZB0 460 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 OTOP3Q7RTS5 596 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 NLGN1Q8N2Q7 840 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 LILRB2Q8N423 598 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 LINC00482Q8N8I6 264 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 JMYQ8N9B5 988 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 C20orf173Q96LM9 149 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 KCNJ15Q99712 375 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 DHRS4Q9BTZ2 278 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 SLC6A20Q9NP91 592 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 PARD6AQ9NPB6 346 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 MYOTQ9UBF9 498 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 ASH2LQ9UBL3 628 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 WASF3Q9UPY6 502 aa6.22□□□□□ -1.41
CD44-217ENST00000525348 MRPS23Q9Y3D9 190 aaKnown RBP6.22□□□□□ -1.41
CD44-217ENST00000525348 SH3D21A4FU49 640 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 SLC27A2O14975 620 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 NKRFO15226 690 aaKnown RBP eCLIP6.21□□□□□ -1.42
CD44-217ENST00000525348 LRG1P02750 347 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 HOXA5P20719 270 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 ITGA1P56199 1179 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 CHRNA2Q15822 529 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 SOGA3Q5TF21 947 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 FEZF2Q8TBJ5 459 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 ZBTB8AQ96BR9 441 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 C11orf84Q9BUA3 381 aaPredicted RBP6.21□□□□□ -1.42
CD44-217ENST00000525348 XYLT2Q9H1B5 865 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 SMOC1Q9H4F8 434 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 ZCCHC4Q9H5U6 513 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 DTLQ9NZJ0 730 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 TELO2Q9Y4R8 837 aa6.21□□□□□ -1.42
CD44-217ENST00000525348 A0A0G2JLL6 359 aaPredicted RBP6.2□□□□□ -1.42
CD44-217ENST00000525348 TCRBV5S4A2TA0A5A2 114 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 LTFP02788 710 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 SLURP1P55000 103 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 BMS1Q14692 1282 aaKnown RBP6.2□□□□□ -1.42
CD44-217ENST00000525348 LONRF2Q1L5Z9 754 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 MAMDC2Q7Z304 686 aaPredicted RBP6.2□□□□□ -1.42
CD44-217ENST00000525348 CLEC4DQ8WXI8 215 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 PTPRN2Q92932 1015 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 SPATA25Q9BR10 227 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 RBPJLQ9UBG7 517 aa6.2□□□□□ -1.42
CD44-217ENST00000525348 CDK11AQ9UQ88 783 aaPredicted RBP6.2□□□□□ -1.42
CD44-217ENST00000525348 OTOL1A6NHN0 477 aaPredicted RBP6.19□□□□□ -1.42
CD44-217ENST00000525348 THBS2P35442 1172 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 ADAM9Q13443 819 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 RTP5Q14D33 572 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 CYP4F22Q6NT55 531 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 TEPPQ6URK8 271 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 PCDH19Q8TAB3 1148 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 UHMK1Q8TAS1 419 aaKnown RBP6.19□□□□□ -1.42
CD44-217ENST00000525348 PHOSPHO1Q8TCT1 267 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 KANSL2Q9H9L4 492 aa6.19□□□□□ -1.42
CD44-217ENST00000525348 LUC7LQ9NQ29 371 aaKnown RBP6.19□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 16.7 ms