RNA–Protein interactions for RNA: ENST00000520286.5

LSM1-202, Transcript of LSM1 homolog, mRNA degradation associated, humanhuman

TSL 1 (best)

Gene LSM1, Length 776 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSM1-202ENST00000520286 H7C1D1 291 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 ZNF561-AS1K7EIQ3 104 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 KIF3BO15066 747 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 GNAT1P11488 350 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 KRT15P19012 456 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 FPR2P25090 351 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 CEBPAP49715 358 aaPredicted RBP9.8□□□□□ -0.84
LSM1-202ENST00000520286 JAM2P57087 298 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 ERVK-21P61565 698 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 DDB1Q16531 1140 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 PTPN21Q16825 1174 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 TEX2Q8IWB9 1127 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 CBARPQ8N350 705 aaPredicted RBP9.8□□□□□ -0.84
LSM1-202ENST00000520286 ASB11Q8WXH4 323 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 SYTL4Q96C24 671 aaPredicted RBP9.8□□□□□ -0.84
LSM1-202ENST00000520286 SCYL1Q96KG9 808 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 RTFDC1Q9BY42 306 aaPredicted RBP9.8□□□□□ -0.84
LSM1-202ENST00000520286 SMURF1Q9HCE7 757 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 MARCH2Q9P0N8 246 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 GULP1Q9UBP9 304 aa9.8□□□□□ -0.84
LSM1-202ENST00000520286 MYBL2P10244 700 aa9.79□□□□□ -0.84
LSM1-202ENST00000520286 SPIRE1Q08AE8 756 aa9.79□□□□□ -0.84
LSM1-202ENST00000520286 Q8N1Y9 231 aa9.79□□□□□ -0.84
LSM1-202ENST00000520286 TNFRSF10DQ9UBN6 386 aa9.79□□□□□ -0.84
LSM1-202ENST00000520286 ZNF180Q9UJW8 692 aa9.79□□□□□ -0.84
LSM1-202ENST00000520286 TGM5O43548 720 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 PPP1R11O60927 126 aaPredicted RBP9.78□□□□□ -0.84
LSM1-202ENST00000520286 AMY2AP04746 511 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 COL6A2P12110 1019 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 ATF3P18847 181 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 AMY2BP19961 511 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 IARSP41252 1262 aaKnown RBP9.78□□□□□ -0.84
LSM1-202ENST00000520286 RBM10P98175 930 aaKnown RBP9.78□□□□□ -0.84
LSM1-202ENST00000520286 RGL3Q3MIN7 710 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 BROXQ5VW32 411 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 ARHGAP36Q6ZRI8 547 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 C14orf80Q86SX3 495 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 CCAR1Q8IX12 1150 aaKnown RBP9.78□□□□□ -0.84
LSM1-202ENST00000520286 MAP6Q96JE9 813 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 CAMKK2Q96RR4 588 aa9.78□□□□□ -0.84
LSM1-202ENST00000520286 COA3Q9Y2R0 106 aaPredicted RBP9.78□□□□□ -0.84
LSM1-202ENST00000520286 FADS2P1A8MWK0 482 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 C22orf46C9J442 243 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 MT-CO1P00395 513 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 FUCA1P04066 466 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 H2AFB1P0C5Y9 115 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 H2AFB2P0C5Z0 115 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 ZBTB48P10074 688 aaPredicted RBP9.77□□□□□ -0.85
LSM1-202ENST00000520286 FOSL1P15407 271 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 GRIK1P39086 918 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 PRKCQQ04759 706 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 KLF1Q13351 362 aaPredicted RBP9.77□□□□□ -0.85
LSM1-202ENST00000520286 ZNF174Q15697 407 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 AOC3Q16853 763 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 INAVAQ3KP66 663 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 HHIPL2Q6UWX4 724 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 OTOP3Q7RTS5 596 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 ZDHHC13Q8IUH4 622 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 FUBP3Q96I24 572 aaKnown RBP eCLIP9.77□□□□□ -0.85
LSM1-202ENST00000520286 JMJD8Q96S16 334 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 PCGF6Q9BYE7 350 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 EPB41L1Q9H4G0 881 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 NOB1Q9ULX3 412 aaKnown RBP9.77□□□□□ -0.85
LSM1-202ENST00000520286 X6R8D5 127 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 WASHC2AQ641Q2 1341 aa9.77□□□□□ -0.85
LSM1-202ENST00000520286 TCRBV5S4A2TA0A5A2 114 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 KCNK3O14649 394 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 DGKIO75912 1065 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 ABLIM3O94929 683 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 ZSCAN20P17040 1043 aaPredicted RBP9.76□□□□□ -0.85
LSM1-202ENST00000520286 SLC9A1P19634 815 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 CCND1P24385 295 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 IRF9Q00978 393 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 HABP4Q5JVS0 413 aaKnown RBP9.76□□□□□ -0.85
LSM1-202ENST00000520286 PTRH1Q86Y79 214 aaKnown RBP9.76□□□□□ -0.85
LSM1-202ENST00000520286 KIAA1958Q8N8K9 716 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 HHIPL1Q96JK4 782 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 G6PC3Q9BUM1 346 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 LUC7LQ9NQ29 371 aaKnown RBP9.76□□□□□ -0.85
LSM1-202ENST00000520286 C14orf119Q9NWQ9 140 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP9.76□□□□□ -0.855e-6■□□□□ 10.9
LSM1-202ENST00000520286 VAV3Q9UKW4 847 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 LUC7L2Q9Y383 392 aaKnown RBP9.76□□□□□ -0.85
LSM1-202ENST00000520286 RWDD3Q9Y3V2 267 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 SPO11Q9Y5K1 396 aa9.76□□□□□ -0.85
LSM1-202ENST00000520286 A0A1W2PQ45 241 aaPredicted RBP9.75□□□□□ -0.85
LSM1-202ENST00000520286 A0A1W2PQY0 241 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 PRR19A6NJB7 356 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 NKRFO15226 690 aaKnown RBP eCLIP9.75□□□□□ -0.85
LSM1-202ENST00000520286 GNALP38405 381 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 FAM102BQ5T8I3 360 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 EP400NLQ6ZTU2 488 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 SLCO6A1Q86UG4 719 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 PLEKHO2Q8TD55 490 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 JPH3Q8WXH2 748 aaPredicted RBP9.75□□□□□ -0.85
LSM1-202ENST00000520286 RHOBTB2Q9BYZ6 727 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 IP6K2Q9UHH9 426 aa9.75□□□□□ -0.85
LSM1-202ENST00000520286 RFPL1O75677 317 aa9.74□□□□□ -0.85
LSM1-202ENST00000520286 SNUPNO95149 360 aaKnown RBP9.74□□□□□ -0.85
LSM1-202ENST00000520286 DUSP4Q13115 394 aa9.74□□□□□ -0.85
Retrieved 100 of 20,778 RNA–protein pairs in 229.9 ms