RNA–Protein interactions for RNA: ENST00000513024.5

LIMCH1-218, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,129 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-218ENST00000513024 NAA35Q5VZE5 725 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 FBXO38Q6PIJ6 1188 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 SIRT2Q8IXJ6 389 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 IP6K1Q92551 441 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 SERPINI1Q99574 410 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ARAP3Q8WWN8 1544 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 AFF2P51816 1311 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 EXOC3O60645 756 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 IREB2P48200 963 aaKnown RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 KLC1Q07866 573 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 NANOGNBQ7Z5D8 188 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 RDH13Q8NBN7 331 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 RNF169Q8NCN4 708 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 CLIC6Q96NY7 704 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 ASCC2Q9H1I8 757 aaPredicted RBP9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 TEKT2Q9UIF3 430 aa9.45□□□□□ -0.9
LIMCH1-218ENST00000513024 KIF1BO60333 1816 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TMEM94Q12767 1356 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CALUO43852 315 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ADCY3O60266 1144 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 GYS2P54840 703 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 MORC3Q14149 939 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CABP7Q86V35 215 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 DACH2Q96NX9 599 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CARD9Q9H257 536 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 SAP30BPQ9UHR5 308 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TRIM16O95361 564 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CAPN1P07384 714 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TSPY1Q01534 308 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 DHX9Q08211 1270 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CASP8Q14790 479 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 NAIF1Q69YI7 327 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TRIM42Q8IWZ5 723 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CMTR1Q8N1G2 835 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ANKRD35Q8N283 1001 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP9.44□□□□□ -0.92e-6■■■■■ 44.5
LIMCH1-218ENST00000513024 TUBGCP3Q96CW5 907 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 PCDHB13Q9Y5F0 798 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 SNX5Q9Y5X3 404 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CFAP73A6NFT4 308 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 THAP12O43422 761 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 SLFN14P0C7P3 912 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 EEF1GP26641 437 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 SERPINB3P29508 390 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CASP14P31944 242 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 DMPKQ09013 629 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ALS2CLQ60I27 953 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 PDXDC1Q6P996 788 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ANO5Q75V66 913 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ST13P5Q8NFI4 369 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TDRD7Q8NHU6 1098 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 KCNV2Q8TDN2 545 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 XAGE2Q96GT9 111 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 RIC8AQ9NPQ8 531 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TYW1Q9NV66 732 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ERBB4Q15303 1308 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 MAPK13O15264 365 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 PDE5AO76074 875 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 CMA1P23946 247 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 ADD1P35611 737 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 RAB14P61106 215 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 EHHADHQ08426 723 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 NONOQ15233 471 aaKnown RBP eCLIP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 BSPRYQ5W0U4 402 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 HAUS3Q68CZ6 603 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TRMT10CQ7L0Y3 403 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 TTLL11Q8NHH1 800 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 LBHD1Q9BQE6 289 aaPredicted RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 LSM14BQ9BX40 385 aaKnown RBP9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 PARD6BQ9BYG5 372 aa9.44□□□□□ -0.9
LIMCH1-218ENST00000513024 GOLGA8IPA6NC78 632 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 EIF4E1BA6NMX2 242 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 COBLO75128 1261 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 DNM2P50570 870 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 CDR2Q01850 454 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 NCAPH2Q6IBW4 605 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 RINLQ6ZS11 566 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 KRT12Q99456 494 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 GLT8D2Q9H1C3 349 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 SERPINB10P48595 397 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 SLC12A2P55011 1212 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 APLFQ8IW19 511 aaPredicted RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 ENOX1Q8TC92 643 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 TRIM56Q9BRZ2 755 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 MRPS26Q9BYN8 205 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 PNMA3Q9UL41 463 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 PCDHA5Q9Y5H7 936 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 NRXN1Q9ULB1 1477 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 YTHDC2Q9H6S0 1430 aaKnown RBP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 TMCC1O94876 653 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 GCNT3O95395 438 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 PDE6AP16499 860 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 ADCY8P40145 1251 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 RAD23BP54727 409 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 TEX9Q8N6V9 391 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 HAUS7Q99871 368 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 FTOQ9C0B1 505 aaKnown RBP eCLIP9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 EHD2Q9NZN4 543 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 SYCE1LA8MT33 242 aa9.43□□□□□ -0.9
LIMCH1-218ENST00000513024 PYGBP11216 843 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms