RNA–Protein interactions for RNA: ENST00000512946.5

LIMCH1-217, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 5,057 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-217ENST00000512946 MPRIPQ6WCQ1 1025 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 REXO1Q8N1G1 1221 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 BTBD6Q96KE9 485 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 NLRP3Q96P20 1036 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 FAM167BQ9BTA0 163 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 NYXQ9GZU5 481 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 MBD2Q9UBB5 411 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 PLAAQ9Y263 795 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 CAB39Q9Y376 341 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 PARD3Q8TEW0 1356 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 H0Y3Z8 333 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 GOLGA8TH3BQL2 631 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 VAMP4O75379 141 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 GOLGA8HP0CJ92 632 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 ST13P50502 369 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 ARFIP2P53365 341 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 ACTN3Q08043 901 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 CADPS2Q86UW7 1296 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 MAGEB6Q8N7X4 407 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 PBXIP1Q96AQ6 731 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 WWP1Q9H0M0 922 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 ZBTB7BO15156 539 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 OATP04181 439 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 TMPRSS15P98073 1019 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 CDC37Q16543 378 aaPredicted RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 FAM26FQ5R3K3 315 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 RGS9BPQ6ZS82 235 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 TTC13Q8NBP0 860 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 THOC1Q96FV9 657 aaKnown RBP12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 SNX25Q9H3E2 840 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 AP4S1Q9Y587 144 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 RUSC2Q8N2Y8 1516 aa12.09□□□□□ -0.47
LIMCH1-217ENST00000512946 ATP5J2-PTCD1G3V325 749 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 DIAPH2O60879 1101 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 PDE5AO76074 875 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 SERPING1P05155 500 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 ZNF483Q8TF39 744 aaPredicted RBP12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 SCG3Q8WXD2 468 aaKnown RBP12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 PGBD1Q96JS3 809 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 ATP6V1G3Q96LB4 118 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 C19orf44Q9H6X5 657 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 ECT2Q9H8V3 914 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 UBAP1Q9NZ09 502 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 STRIP2Q9ULQ0 834 aa12.08□□□□□ -0.47
LIMCH1-217ENST00000512946 SYNGAP1Q96PV0 1343 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 PCP11498 1178 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 SERPINB3P29508 390 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 THOC5Q13769 683 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 INPP5AQ14642 412 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 SYCP2LQ5T4T6 812 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 SPOPLQ6IQ16 392 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 DYMQ7RTS9 669 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 NELFCDQ8IXH7 590 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 DYNC1LI1Q9Y6G9 523 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 NDUFA10O95299 355 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 SEMA3FQ13275 785 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 CNGA2Q16280 664 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 TMEM259Q4ZIN3 620 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 CYP4F22Q6NT55 531 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 CCDC80Q76M96 950 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 CHST3Q7LGC8 479 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 NCAPG2Q86XI2 1143 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 PYROXD1Q8WU10 500 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 GAPVD1Q14C86 1478 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 FAM187AA6NFU0 413 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 LDHBP07195 334 aaKnown RBP12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 TRIM67Q6ZTA4 783 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 ARHGEF25Q86VW2 580 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 RFWD2Q8NHY2 731 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 NT5C1BQ96P26 610 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 KCNK16Q96T55 309 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 THAP9Q9H5L6 903 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 EMILIN1Q9Y6C2 1016 aa12.08□□□□□ -0.48
LIMCH1-217ENST00000512946 GSNP06396 782 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 YY1P25490 414 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 MAPK4P31152 587 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 TRIM16LQ309B1 348 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 PLD3Q8IV08 490 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 SH3GL1Q99961 368 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 ARHGEF10LQ9HCE6 1279 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 POLR3EQ9NVU0 708 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 DONSONQ9NYP3 566 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 MAST3O60307 1309 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 B4E1Z4 1266 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 STRNO43815 780 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 GAP43P17677 238 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 HLA-DPA1P20036 260 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 GPTP24298 496 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 ARL4CP56559 192 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 ADAM9Q13443 819 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 CNGA3Q16281 694 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 NDUFA5Q16718 116 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 XAGE3Q8WTP9 111 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 CCDC127Q96BQ5 260 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 FAM161BQ96MY7 647 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 CCDC90BQ9GZT6 254 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 NACA2Q9H009 215 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 COG4Q9H9E3 785 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 MAGEA13PA6NCF6 341 aa12.07□□□□□ -0.48
LIMCH1-217ENST00000512946 ZNF233A6NK53 670 aa12.07□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms