RNA–Protein interactions for RNA: ENST00000511001.2

CHFR-208, Transcript of checkpoint with forkhead and ring finger domains, human

TSL 5

Gene CHFR, Length 892 nt, Biotype processed transcript, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CHFR-208	ENST00000511001	BCAS3	Q9H6U6	928 aa		13.9	□□□□□ -0.18
CHFR-208	ENST00000511001	SEC63	Q9UGP8	760 aa	Known RBP	13.9	□□□□□ -0.18
CHFR-208	ENST00000511001	PRUNE2	Q8WUY3	3088 aa		13.9	□□□□□ -0.18
CHFR-208	ENST00000511001	CNTNAP5	Q8WYK1	1306 aa		13.9	□□□□□ -0.19
CHFR-208	ENST00000511001	HSFX4	A0A1B0GTS1	333 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	HSFX3	A0A1B0GWH4	333 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	HAS3	O00219	553 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	SORBS3	O60504	671 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	GGPS1	O95749	300 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	TGFB3	P10600	412 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	CAST	P20810	708 aa	Known RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	ICAM3	P32942	547 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	PSEN2	P49810	448 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	FUT2	Q10981	343 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	DGKD	Q16760	1214 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	HSDL1	Q3SXM5	330 aa		13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	GDF6	Q6KF10	455 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	INPP4A	Q96PE3	977 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	FAM217B	Q9NTX9	383 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	CXXC1	Q9P0U4	656 aa	Predicted RBP	13.89	□□□□□ -0.19
CHFR-208	ENST00000511001	GRXCR1	A8MXD5	290 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	F2	P00734	622 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	CPA1	P15085	419 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	HSPA4	P34932	840 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	KRT32	Q14532	448 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	SMARCC2	Q8TAQ2	1214 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	CUL5	Q93034	780 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	RTEL1	Q9NZ71	1219 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	SNX14	Q9Y5W7	946 aa		13.88	□□□□□ -0.19
CHFR-208	ENST00000511001	TMEM265	A0A087WTH1	108 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	SPATA31C2	B4DYI2	1134 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	ZBTB43	O43298	467 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	STAM2	O75886	525 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	FGB	P02675	491 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	ZNF286B	P0CG31	522 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	DNAJB2	P25686	324 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	CHMP4BP1	P59074	171 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	MFSD10	Q14728	455 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	RTN1	Q16799	776 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	PCNX4	Q63HM2	1172 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	TYW1B	Q6NUM6	668 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	SYNE3	Q6ZMZ3	975 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	DHX38	Q92620	1227 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	SPATA33	Q96N06	139 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	RBM28	Q9NW13	759 aa	Known RBP	13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	HDAC6	Q9UBN7	1215 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	GTF2IRD1	Q9UHL9	959 aa		13.87	□□□□□ -0.19
CHFR-208	ENST00000511001	KLF18	A0A0U1RQI7	1052 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	GOLGA8A	A7E2F4	631 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	GOLGA8B	A8MQT2	603 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	PITPNM1	O00562	1244 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	PPFIA4	O75335	1185 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	IQCF3	P0C7M6	154 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	CDC27	P30260	824 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	PBX2	P40425	430 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	HIC1	Q14526	733 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	PTGIS	Q16647	500 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	UBE2S	Q16763	222 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	KIAA0753	Q2KHM9	967 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	WWC2	Q6AWC2	1192 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	OTOP2	Q7RTS6	562 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	RPUSD2	Q8IZ73	545 aa	Known RBP	13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	JAKMIP1	Q96N16	626 aa	Known RBP	13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	CDX2	Q99626	313 aa	Predicted RBP	13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	C16orf70	Q9BSU1	422 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	ALG1	Q9BT22	464 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	KATNAL1	Q9BW62	490 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	PBX4	Q9BYU1	374 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	PSTPIP2	Q9H939	334 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	TELO2	Q9Y4R8	837 aa		13.86	□□□□□ -0.19
CHFR-208	ENST00000511001	TTC28	Q96AY4	2481 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	FIBP	O43427	364 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	HMGB1	P09429	215 aa	Known RBP	13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	RCAN1	P53805	252 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	RBL2	Q08999	1139 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	BFSP2	Q13515	415 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	GPNMB	Q14956	572 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	GNPTAB	Q3T906	1256 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	XRRA1	Q6P2D8	792 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001		Q6ZUG5	572 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	HEATR3	Q7Z4Q2	680 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	DEFB128	Q7Z7B8	93 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	AGXT2	Q9BYV1	514 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	MLXIP	Q9HAP2	919 aa		13.85	□□□□□ -0.19
CHFR-208	ENST00000511001	RBAK-RBAKDN	I3L0D1	243 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	LGALS2	P05162	132 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	RFC2	P35250	354 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	ADD1	P35611	737 aa	Known RBP	13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	ZNF200	P98182	395 aa	Predicted RBP	13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	APOBR	Q0VD83	1088 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	NEDD9	Q14511	834 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	TRIM71	Q2Q1W2	868 aa	Known RBP	13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	BLOC1S2	Q6QNY1	142 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	METTL7B	Q6UX53	244 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	CYFIP1	Q7L576	1253 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	FBXL16	Q8N461	479 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	CAGE1	Q8TC20	777 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	MYLIP	Q8WY64	445 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	WNT8B	Q93098	351 aa		13.84	□□□□□ -0.19
CHFR-208	ENST00000511001	TIFA	Q96CG3	184 aa		13.84	□□□□□ -0.19

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