RNA–Protein interactions for RNA: ENST00000507778.1

HMGB1P28-201, Transcript of high mobility group box 1 pseudogene 28, humanhuman

BASIC

Gene HMGB1P28, Length 552 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P28-201ENST00000507778 ATL2Q8NHH9 583 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 FAM126AQ9BYI3 521 aaPredicted RBP5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 XPO5Q9HAV4 1204 aaKnown RBP eCLIP5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 RC3H2Q9HBD1 1191 aaKnown RBP5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 CRTAC1Q9NQ79 661 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 CBLCQ9ULV8 474 aa5.67□□□□□ -1.5
HMGB1P28-201ENST00000507778 TRAF5O00463 557 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 NTRK1P04629 796 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 COL6A2P12110 1019 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 PNLIPP16233 465 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 PDE6AP16499 860 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 CDK11BP21127 795 aaKnown RBP5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 AFMP43652 599 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 LACTBP83111 547 aaPredicted RBP5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 SART3Q15020 963 aaKnown RBP5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 GPR19Q15760 415 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 TIGD5Q53EQ6 642 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 OTOP3Q7RTS5 596 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 NBPF11Q86T75 865 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 OSTM1Q86WC4 334 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 SIRT2Q8IXJ6 389 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 NXPE1Q8N323 547 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 CISD2Q8N5K1 135 aaKnown RBP5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 C2orf69Q8N8R5 385 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 ABHD4Q8TB40 342 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 USP7Q93009 1102 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 FBLN5Q9UBX5 448 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 B4GALT6Q9UBX8 382 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 ZKSCAN5Q9Y2L8 839 aa5.66□□□□□ -1.5
HMGB1P28-201ENST00000507778 KRIT1O00522 736 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 GAS7O60861 476 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 EFEMP2O95967 443 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 F2P00734 622 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 GP2P55259 537 aaKnown RBP5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 CHRNA2Q15822 529 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 ARHGAP44Q17R89 818 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 HABP4Q5JVS0 413 aaKnown RBP5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 ARHGAP36Q6ZRI8 547 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 ABI1Q8IZP0 508 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 PRPF38AQ8NAV1 312 aaKnown RBP5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 CHST14Q8NCH0 376 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 PIP4K2CQ8TBX8 421 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 SHISA4Q96DD7 197 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 TTC1Q99614 292 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 ZFP64Q9NPA5 681 aa5.65□□□□□ -1.5
HMGB1P28-201ENST00000507778 ZNF891A8MT65 544 aaPredicted RBP5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 BRINP1O60477 761 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 EYA4O95677 639 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 GLI4P10075 376 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 KRT15P19012 456 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 GALK1P51570 392 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 MECP2P51608 486 aaKnown RBP5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 JAM2P57087 298 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 SKOR2Q2VWA4 1001 aaPredicted RBP5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 ARTNQ5T4W7 220 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 EP400NLQ6ZTU2 488 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 RPUSD2Q8IZ73 545 aaKnown RBP5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 NETO2Q8NC67 525 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 FLAD1Q8NFF5 587 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 IFT22Q9H7X7 185 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC6A20Q9NP91 592 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 NUB1Q9Y5A7 615 aa5.64□□□□□ -1.51
HMGB1P28-201ENST00000507778 PTPDC1A2A3K4 754 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZNF561-AS1K7EIQ3 104 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 HGSO14964 777 aaPredicted RBP5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 NKRFO15226 690 aaKnown RBP eCLIP5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 ZEB2O60315 1214 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 MAFKO60675 156 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 AMY2AP04746 511 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 CYBBP04839 570 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 BPIP17213 487 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 AMY2BP19961 511 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC6A11P48066 632 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 CDKN1CP49918 316 aaPredicted RBP5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 EVA1CP58658 441 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 IL2P60568 153 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 DSG1Q02413 1049 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 STEAP3Q658P3 488 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 CYP4F22Q6NT55 531 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 PTRH1Q86Y79 214 aaKnown RBP5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 DCP2Q8IU60 420 aaKnown RBP5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 NLGN4XQ8N0W4 816 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 WDR66Q8TBY9 1149 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 SEC14L1Q92503 715 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 KIRREL1Q96J84 757 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 RNF32Q9H0A6 362 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 AP5M1Q9H0R1 490 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 SMOC1Q9H4F8 434 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 SMURF1Q9HCE7 757 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 HOMER2Q9NSB8 354 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 NUDT5Q9UKK9 219 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 DSEQ9UL01 958 aa5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 YBX2Q9Y2T7 364 aaKnown RBP5.63□□□□□ -1.51
HMGB1P28-201ENST00000507778 TCRBV5S4A2TA0A5A2 114 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 SLC12A8A0AV02 714 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 ALG1L2C9J202 215 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 SRGAP3O43295 1099 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 OCRLQ01968 901 aa5.62□□□□□ -1.51
HMGB1P28-201ENST00000507778 STAT4Q14765 748 aa5.62□□□□□ -1.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.8 ms