RNA–Protein interactions for RNA: ENST00000507401.2

SCN1A-207, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 3

Gene SCN1A, Length 711 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-207ENST00000507401 PRDM5Q9NQX1 630 aaPredicted RBP9.3□□□□□ -0.92
SCN1A-207ENST00000507401 PDGFCQ9NRA1 345 aa9.3□□□□□ -0.92
SCN1A-207ENST00000507401 TMEM39AQ9NV64 488 aa9.3□□□□□ -0.92
SCN1A-207ENST00000507401 MRPL11Q9Y3B7 192 aaKnown RBP9.3□□□□□ -0.92
SCN1A-207ENST00000507401 TULP1O00294 542 aaPredicted RBP9.29□□□□□ -0.92
SCN1A-207ENST00000507401 IFIT3O14879 490 aaKnown RBP9.29□□□□□ -0.92
SCN1A-207ENST00000507401 KPNA6O60684 536 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 PQBP1O60828 265 aaKnown RBP9.29□□□□□ -0.92
SCN1A-207ENST00000507401 TIMP1P01033 207 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 RAG1P15918 1043 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 GHRHRQ02643 423 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 PDE4DQ08499 809 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 TROAPQ12815 778 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 QRICH1Q2TAL8 776 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 FAM109BQ6ICB4 259 aaPredicted RBP9.29□□□□□ -0.92
SCN1A-207ENST00000507401 SLC30A10Q6XR72 485 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 EEPD1Q7L9B9 569 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 TLK2Q86UE8 772 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 FBXO16Q8IX29 292 aaPredicted RBP9.29□□□□□ -0.92
SCN1A-207ENST00000507401 TMTC2Q8N394 836 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 IGDCC4Q8TDY8 1250 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 NSUN6Q8TEA1 469 aaKnown RBP9.29□□□□□ -0.92
SCN1A-207ENST00000507401 SCFD2Q8WU76 684 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 VTI1AQ96AJ9 217 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 IWS1Q96ST2 819 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 CPVLQ9H3G5 476 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 RIOX1Q9H6W3 641 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 VAT1LQ9HCJ6 419 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 CHMP5Q9NZZ3 219 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 MAD2L2Q9UI95 211 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 TBX21Q9UL17 535 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 LCTP09848 1927 aa9.29□□□□□ -0.92
SCN1A-207ENST00000507401 LAMA3Q16787 3333 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 ZBTB5O15062 677 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 TLR3O15455 904 aaKnown RBP9.28□□□□□ -0.92
SCN1A-207ENST00000507401 DHX16O60231 1041 aaKnown RBP9.28□□□□□ -0.92
SCN1A-207ENST00000507401 CD4P01730 458 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 SMARCA1P28370 1054 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 CPT1AP50416 773 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 BEX3Q00994 111 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 ITGA7Q13683 1181 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 GRM4Q14833 912 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 WTAPQ15007 396 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 USH1GQ495M9 461 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 BRDTQ58F21 947 aaPredicted RBP9.28□□□□□ -0.92
SCN1A-207ENST00000507401 BMP2KLQ5H9B9 411 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 MFSD5Q6N075 450 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 CXCL17Q6UXB2 119 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 CATIPQ7Z7H3 387 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 FAM126BQ8IXS8 530 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 STAG2Q8N3U4 1231 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 SYTL5Q8TDW5 730 aaPredicted RBP9.28□□□□□ -0.92
SCN1A-207ENST00000507401 TBC1D5Q92609 795 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 LSG1Q9H089 658 aaKnown RBP9.28□□□□□ -0.92
SCN1A-207ENST00000507401 POLR3EQ9NVU0 708 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 PCDHA1Q9Y5I3 950 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 RBM8AQ9Y5S9 174 aaKnown RBP9.28□□□□□ -0.92
SCN1A-207ENST00000507401 LTBP2Q14767 1821 aa9.28□□□□□ -0.92
SCN1A-207ENST00000507401 MYH6P13533 1939 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 PNMA6FA0A0J9YX94 578 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 A6NJR5 290 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 EIF3JO75822 258 aaKnown RBP9.27□□□□□ -0.93
SCN1A-207ENST00000507401 XRCC6P12956 609 aaKnown RBP eCLIP9.27□□□□□ -0.93
SCN1A-207ENST00000507401 ITGB8P26012 769 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 MCM4P33991 863 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 MCM5P33992 734 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 LIFRP42702 1097 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 GCGRP47871 477 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 FPGSQ05932 587 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 TTLL4Q14679 1199 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 NECTIN1Q15223 517 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 SHHQ15465 462 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 STXBP2Q15833 593 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 TMEM67Q5HYA8 995 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 TMEM63BQ5T3F8 832 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 STOX1Q6ZVD7 989 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 MB21D2Q8IYB1 491 aaPredicted RBP9.27□□□□□ -0.93
SCN1A-207ENST00000507401 SMAP1Q8IYB5 467 aaPredicted RBP9.27□□□□□ -0.93
SCN1A-207ENST00000507401 EMID1Q96A84 441 aaPredicted RBP9.27□□□□□ -0.93
SCN1A-207ENST00000507401 TMEM87BQ96K49 555 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 TAAR1Q96RJ0 339 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 RMDN3Q96TC7 470 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 LZTS2Q9BRK4 669 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 ESYT1Q9BSJ8 1104 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 TMUB1Q9BVT8 246 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 IRX2Q9BZI1 471 aaPredicted RBP9.27□□□□□ -0.93
SCN1A-207ENST00000507401 GRIN2DO15399 1336 aa9.27□□□□□ -0.93
SCN1A-207ENST00000507401 SUPT20HL2P0C7V6 817 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 TXNP10599 105 aaKnown RBP9.26□□□□□ -0.93
SCN1A-207ENST00000507401 KIF5BP33176 963 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 HSD17B4P51659 736 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 ANTXR2P58335 489 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 PTPN11Q06124 597 aaPredicted RBP9.26□□□□□ -0.93
SCN1A-207ENST00000507401 CCDC173Q0VFZ6 552 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 PPP2R5BQ15173 497 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 CSPP1Q1MSJ5 1256 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 PUS10Q3MIT2 529 aaKnown RBP9.26□□□□□ -0.93
SCN1A-207ENST00000507401 ARHGEF16Q5VV41 709 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 CCDC62Q6P9F0 684 aa9.26□□□□□ -0.93
SCN1A-207ENST00000507401 KCNV1Q6PIU1 500 aa9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 51.3 ms