RNA–Protein interactions for RNA: ENST00000503057.5

LIMCH1-205, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 5,467 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-205ENST00000503057 GUCY2FP51841 1108 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 CACNB1Q02641 598 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 XKR9Q5GH70 373 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 ANKRD13CQ8N6S4 541 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 SMCR8Q8TEV9 937 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 SUGT1Q9Y2Z0 365 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 TNFRSF11AQ9Y6Q6 616 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 ITIH6Q6UXX5 1313 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 SLIT3O75094 1523 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 TESPA1A2RU30 521 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 TEX33O43247 280 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 EHHADHQ08426 723 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 COL5A2P05997 1499 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 PNMA6AP0CW24 399 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 CTNNA1P35221 906 aaKnown RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 DMP1Q13316 513 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 E4F1Q66K89 784 aaPredicted RBP11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 SPICE1Q8N0Z3 855 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 STAG2Q8N3U4 1231 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 NKIRAS1Q9NYS0 192 aa11.79□□□□□ -0.52
LIMCH1-205ENST00000503057 CNTNAP4Q9C0A0 1308 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 FGFR2P21802 821 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 PDE6CP51160 858 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 FMR1Q06787 632 aaKnown RBP eCLIP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 PAF1Q8N7H5 531 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 LINC00116Q8NCU8 138 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 CEP63Q96MT8 703 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 PDS5AQ29RF7 1337 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 CRKP46108 304 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 ITPK1Q13572 414 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 SLC27A3Q5K4L6 730 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 DENND2CQ68D51 928 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 CCSER1Q9C0I3 900 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 CEP72Q9P209 647 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 ASIC3Q9UHC3 531 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 FEZ2Q9UHY8 353 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 AGTPBP1Q9UPW5 1226 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 CNTNAP5Q8WYK1 1306 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 ANO9A1A5B4 782 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 DCAF15Q66K64 600 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 FAM133AQ8N9E0 248 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 MARCH10Q8NA82 808 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 AZI2Q9H6S1 392 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 MRFAP1Q9Y605 127 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 C2orf54Q08AI8 447 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 PTPAQ15257 358 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 INTS5Q6P9B9 1019 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 TRAF3IP1Q8TDR0 691 aaPredicted RBP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 MAK16Q9BXY0 300 aaKnown RBP11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 TMEM206Q9H813 350 aa11.78□□□□□ -0.52
LIMCH1-205ENST00000503057 POTEMA6NI47 508 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 MEIS1O00470 390 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 PPFIA4O75335 1185 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 GBP1P32455 592 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 ARHGAP25P42331 645 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 FAM160B2Q86V87 743 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 DHX37Q8IY37 1157 aaKnown RBP11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 NRXN3Q9Y4C0 1643 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 FAM205CA6NFA0 338 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 PBKQ96KB5 322 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 ACCSQ96QU6 501 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 PARVGQ9HBI0 331 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 GCNT4Q9P109 453 aa11.77□□□□□ -0.52
LIMCH1-205ENST00000503057 TNNI1P19237 187 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 GUCY2DQ02846 1103 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 NFIXQ14938 502 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 NR1I3Q14994 352 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 RUNDC3BQ96NL0 473 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 KRT12Q99456 494 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 CAPS2Q9BXY5 557 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 CPVLQ9H3G5 476 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 CEP85LQ5SZL2 805 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 DEPTORQ8TB45 409 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 PPM1EQ8WY54 764 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 C1orf112Q9NSG2 853 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 TMEM260Q9NX78 707 aa11.77□□□□□ -0.53
LIMCH1-205ENST00000503057 NOP56O00567 594 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 INPP5BP32019 993 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 GNGT1P63211 74 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 ALCAMQ13740 583 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 KRT71Q3SY84 523 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 DPH6Q7L8W6 267 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 SP8Q8IXZ3 490 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 GRK7Q8WTQ7 553 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 FAM204AQ9H8W3 233 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 SPATA31A5Q5VU36 1347 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 SPATA31A7Q8IWB4 1347 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 PP2D1A8MPX8 630 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 GAS8O95995 478 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 MFAP3P55082 362 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 CYP27A1Q02318 531 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 COASYQ13057 564 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 VPS72Q15906 364 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 GUF1Q8N442 669 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 MXD3Q9BW11 206 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 VIMP08670 466 aaKnown RBP11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 LIG4P49917 911 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 AOC3Q16853 763 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 PODNQ7Z5L7 613 aa11.76□□□□□ -0.53
LIMCH1-205ENST00000503057 ADGRF4Q8IZF3 695 aa11.76□□□□□ -0.53
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms