RNA–Protein interactions for RNA: ENST00000497026.5

CSMD3-208, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 1 (best)

Gene CSMD3, Length 1,406 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-208ENST00000497026 STARD3NLO95772 234 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 CANXP27824 592 aaKnown RBP6.28□□□□□ -1.4
CSMD3-208ENST00000497026 TRHRP34981 398 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-208ENST00000497026 PIP4K2AP48426 406 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-208ENST00000497026 EIF4A1P60842 406 aaKnown RBP6.28□□□□□ -1.4
CSMD3-208ENST00000497026 EGR3Q06889 387 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 DDR1Q08345 913 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 MRPL58Q14197 206 aaKnown RBP6.28□□□□□ -1.4
CSMD3-208ENST00000497026 ARSHQ5FYA8 562 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 TMEM67Q5HYA8 995 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 PRR23BQ6ZRT6 265 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 TMPRSS7Q7RTY8 843 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 KSR1Q8IVT5 923 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 ZNF296Q8WUU4 475 aaPredicted RBP6.28□□□□□ -1.4
CSMD3-208ENST00000497026 CCDC74BQ96LY2 380 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 GPATCH2Q9NW75 528 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 DUSP13Q9UII6 198 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 KCNH3Q9ULD8 1083 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 PXDNLA1KZ92 1463 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 DLEC1Q9Y238 1755 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 ANKRD31Q8N7Z5 1873 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 CHD4Q14839 1912 aa6.28□□□□□ -1.4
CSMD3-208ENST00000497026 GOLGB1Q14789 3259 aaKnown RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 APAF1O14727 1248 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 GLI1P08151 1106 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 SNRPA1P09661 255 aaKnown RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 TM4SF1P30408 202 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 GBP1P32455 592 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 ANP32AP39687 249 aaKnown RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 IL6STP40189 918 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 CWF19L2Q2TBE0 894 aaKnown RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 GAB4Q2WGN9 574 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 SEZ6Q53EL9 994 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 NLGN1Q8N2Q7 840 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 PNISRQ8TF01 805 aaKnown RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 RNF141Q8WVD5 230 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 CCDC136Q96JN2 1154 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 TEX13AQ9BXU3 409 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 TRIT1Q9H3H1 467 aaKnown RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 UBP1Q9NZI7 540 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 NARFQ9UHQ1 456 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 PCDHA11Q9Y5I1 949 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 CD2APQ9Y5K6 639 aa6.27□□□□□ -1.41
CSMD3-208ENST00000497026 COL11A2P13942 1736 aaPredicted RBP6.27□□□□□ -1.41
CSMD3-208ENST00000497026 CARMIL3Q8ND23 1372 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 NUP98P52948 1817 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 SHISA3A0PJX4 238 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 SLC22A31A6NKX4 558 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 CCER2I3L3R5 266 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 POLRMTO00411 1230 aaKnown RBP6.26□□□□□ -1.41
CSMD3-208ENST00000497026 ANP32CO43423 234 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 CAMTA2O94983 1202 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 SRFP11831 508 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 POLR2BP30876 1174 aaKnown RBP6.26□□□□□ -1.41
CSMD3-208ENST00000497026 CHMP4BP1P59074 171 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 LMOD3Q0VAK6 560 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 MESP2Q0VG99 397 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 NFIXQ14938 502 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 KRT24Q2M2I5 525 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 LCE5AQ5TCM9 118 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 SPOCD1Q6ZMY3 1216 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 HS2ST1Q7LGA3 356 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 TSPYL5Q86VY4 417 aaPredicted RBP6.26□□□□□ -1.41
CSMD3-208ENST00000497026 DIRC2Q96SL1 478 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 GPR62Q9BZJ7 368 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 TSPYL4Q9UJ04 414 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 TMEM59LQ9UK28 342 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 ARFGEF1Q9Y6D6 1849 aa6.26□□□□□ -1.41
CSMD3-208ENST00000497026 CHL1O00533 1208 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 GREM1O60565 184 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 CLCQ05315 142 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 KRTAP19-4Q3LI73 84 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 TMCO4Q5TGY1 634 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 GK5Q6ZS86 529 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 LRP10Q7Z4F1 713 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 TMEM87AQ8NBN3 555 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 ABHD4Q8TB40 342 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 ANTXR1Q9H6X2 564 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 BABAM1Q9NWV8 329 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 ANKRD36CQ5JPF3 1778 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 TNRC6CQ9HCJ0 1690 aaKnown RBP6.25□□□□□ -1.41
CSMD3-208ENST00000497026 UBOX5O94941 541 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 ZNF853P0CG23 659 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 RAG1P15918 1043 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 ZNF16P17020 682 aaPredicted RBP6.25□□□□□ -1.41
CSMD3-208ENST00000497026 MCM4P33991 863 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 TBC1D9BQ66K14 1250 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 OVOS1Q6IE37 1185 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 SLC38A3Q99624 504 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 FAM53CQ9NYF3 392 aa6.25□□□□□ -1.41
CSMD3-208ENST00000497026 A0A087WZG4 1122 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 RGS13O14921 159 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 RAC2P15153 192 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 KCNA3P22001 575 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 CACNA1SQ13698 1873 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 PKN1Q16512 942 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 CLEC16AQ2KHT3 1053 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 PROSER3Q2NL68 480 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 LDLRAD1Q5T700 205 aa6.24□□□□□ -1.41
CSMD3-208ENST00000497026 MYLIPQ8WY64 445 aa6.24□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms