RNA–Protein interactions for RNA: ENST00000496116.1

CMSS1-208, Transcript of cms1 ribosomal small subunit homolog (yeast), humanhuman

TSL 1 (best)

Gene CMSS1, Length 2,145 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CMSS1-208ENST00000496116 ZMYND15Q9H091 742 aa12.3□□□□□ -0.44
CMSS1-208ENST00000496116 TDRD3Q9H7E2 651 aaKnown RBP12.3□□□□□ -0.44
CMSS1-208ENST00000496116 SYNPO2Q9UMS6 1093 aa12.3□□□□□ -0.44
CMSS1-208ENST00000496116 REXO2Q9Y3B8 237 aaKnown RBP12.3□□□□□ -0.44
CMSS1-208ENST00000496116 COL2A1P02458 1487 aaPredicted RBP12.3□□□□□ -0.44
CMSS1-208ENST00000496116 RASSF10A6NK89 507 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 ZRANB2O95218 330 aaKnown RBP eCLIP12.29□□□□□ -0.44
CMSS1-208ENST00000496116 ABL1P00519 1130 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 PLA2G4BP0C869 781 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 BMP3P12645 472 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 ZSCAN20P17040 1043 aaPredicted RBP12.29□□□□□ -0.44
CMSS1-208ENST00000496116 ARHGAP4P98171 946 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 FKBP3Q00688 224 aaKnown RBP12.29□□□□□ -0.44
CMSS1-208ENST00000496116 GABPB1Q06547 395 aaPredicted RBP12.29□□□□□ -0.44
CMSS1-208ENST00000496116 SHROOM1Q2M3G4 852 aaPredicted RBP12.29□□□□□ -0.44
CMSS1-208ENST00000496116 SYDE2Q5VT97 1194 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 SIAH1Q8IUQ4 282 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 GJA10Q969M2 543 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 PRDM10Q9NQV6 1147 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 TMOD2Q9NZR1 351 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 E9PMD0 336 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 PSMD14O00487 310 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 NDUFB10O96000 172 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 CHRNA5P30532 468 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 TRAF1Q13077 416 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 Q4G0T1 1027 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 LRRC55Q6ZSA7 311 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 CCDC42Q96M95 316 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 CSRNP1Q96S65 589 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 PARD6BQ9BYG5 372 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 TSGA10Q9BZW7 698 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 ARFGAP3Q9NP61 516 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 PUF60Q9UHX1 559 aaKnown RBP12.29□□□□□ -0.44
CMSS1-208ENST00000496116 MYO6Q9UM54 1294 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 PLAGL2Q9UPG8 496 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 FHOD1Q9Y613 1164 aa12.29□□□□□ -0.44
CMSS1-208ENST00000496116 POTEB3A0JP26 581 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CTAGE15A4D2H0 777 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 POTECB2RU33 542 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 GNA14O95837 355 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 GH2P01242 217 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CTAGE8P0CG41 777 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 PNMA6AP0CW24 399 aaPredicted RBP12.28□□□□□ -0.44
CMSS1-208ENST00000496116 HNRNPH3P31942 346 aaKnown RBP12.28□□□□□ -0.44
CMSS1-208ENST00000496116 HERVK_113P62684 666 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 LRRC41Q15345 812 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 SPA17Q15506 151 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 USH1GQ495M9 461 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 PRR16Q569H4 304 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 POTEBQ6S5H4 581 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CTAGE6Q86UF2 777 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 GPBP1Q86WP2 473 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CTAGE4Q8IX94 777 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CRYGNQ8WXF5 182 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 JAKMIP2Q96AA8 810 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 ZSWIM4Q9H7M6 989 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 HERC5Q9UII4 1024 aaKnown RBP12.28□□□□□ -0.44
CMSS1-208ENST00000496116 SIK3Q9Y2K2 1263 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 COL4A3BPQ9Y5P4 624 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 PITPNM2Q9BZ72 1349 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CCDC151A5D8V7 595 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 TRAF5O00463 557 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 PPIP5K2O43314 1243 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 KRT18P05783 430 aaKnown RBP12.28□□□□□ -0.44
CMSS1-208ENST00000496116 SREBF1P36956 1147 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 MMP14P50281 582 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 BRD3Q15059 726 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 UTP14CQ5TAP6 766 aaKnown RBP12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CC2D1AQ6P1N0 951 aaPredicted RBP12.28□□□□□ -0.44
CMSS1-208ENST00000496116 BTNL9Q6UXG8 535 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 TEX2Q8IWB9 1127 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 C7orf43Q8WVR3 580 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 CEP63Q96MT8 703 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 TANGO6Q9C0B7 1094 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 EPC1Q9H2F5 836 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 MMRN2Q9H8L6 949 aa12.28□□□□□ -0.44
CMSS1-208ENST00000496116 RGPD3A6NKT7 1758 aaPredicted RBP12.27□□□□□ -0.45
CMSS1-208ENST00000496116 RGPD4Q7Z3J3 1758 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 DMTNQ08495 405 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 KIF5AQ12840 1032 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 CCDC40Q4G0X9 1142 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 ZCWPW2Q504Y3 356 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 HERC4Q5GLZ8 1057 aaPredicted RBP12.27□□□□□ -0.45
CMSS1-208ENST00000496116 ARHGAP27Q6ZUM4 889 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 PIAS4Q8N2W9 510 aaPredicted RBP12.27□□□□□ -0.45
CMSS1-208ENST00000496116 NEK11Q8NG66 645 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 ETNPPLQ8TBG4 499 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 PRMT6Q96LA8 375 aaPredicted RBP12.27□□□□□ -0.45
CMSS1-208ENST00000496116 FAM20AQ96MK3 541 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 EDEM3Q9BZQ6 932 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 XPO5Q9HAV4 1204 aaKnown RBP eCLIP12.27□□□□□ -0.45
CMSS1-208ENST00000496116 ARHGEF10LQ9HCE6 1279 aa12.27□□□□□ -0.45
CMSS1-208ENST00000496116 FAM207AQ9NSI2 230 aaPredicted RBP12.27□□□□□ -0.45
CMSS1-208ENST00000496116 USO1O60763 962 aaKnown RBP12.26□□□□□ -0.45
CMSS1-208ENST00000496116 MED24O75448 989 aa12.26□□□□□ -0.45
CMSS1-208ENST00000496116 TUBBP07437 444 aa12.26□□□□□ -0.45
CMSS1-208ENST00000496116 CYP11B2P19099 503 aa12.26□□□□□ -0.45
CMSS1-208ENST00000496116 VAV2P52735 878 aa12.26□□□□□ -0.45
CMSS1-208ENST00000496116 AMPD2Q01433 879 aa12.26□□□□□ -0.45
CMSS1-208ENST00000496116 GRIPAP1Q4V328 841 aa12.26□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 17.9 ms