RNA–Protein interactions for RNA: ENST00000492357.1

USP54-214, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 3

Gene USP54, Length 353 nt, Biotype processed transcript, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-214ENST00000492357 NFASCO94856 1347 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 PLXNB2O15031 1838 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 VWA3AA6NCI4 1184 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 FAM86B1E9PN63 330 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 WNT7AO00755 349 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 CAVIN2O95810 425 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 HOXC6P09630 235 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 FAM86B2P0C5J1 330 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 CYP2C8P10632 490 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 PFKFB1P16118 471 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 SYKP43405 635 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 ALDH5A1P51649 535 aaPredicted RBP10.89□□□□□ -0.67
USP54-214ENST00000492357 PPP2R5CQ13362 524 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 SNW1Q13573 536 aaKnown RBP10.89□□□□□ -0.67
USP54-214ENST00000492357 HYIQ5T013 277 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 PLA2G4DQ86XP0 818 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 IQUBQ8NA54 791 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 HAS1Q92839 578 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 TAAR1Q96RJ0 339 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 MMP19Q99542 508 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 SENP7Q9BQF6 1050 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 LRRC27Q9C0I9 530 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 CSRNP2Q9H175 543 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 NUP62CLQ9H1M0 184 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 TMEM60Q9H2L4 133 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 CLSTN2Q9H4D0 955 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 TTC12Q9H892 705 aaPredicted RBP10.89□□□□□ -0.67
USP54-214ENST00000492357 STK17AQ9UEE5 414 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 LRWD1Q9UFC0 647 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 LCTP09848 1927 aa10.89□□□□□ -0.67
USP54-214ENST00000492357 LOXHD1Q8IVV2 1947 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 LRRC37A2A6NM11 1700 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 MSH4O15457 936 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 SLC37A4O43826 429 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 PSMD10O75832 226 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 ZNF202O95125 648 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 SFNP31947 248 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 MTMR1Q13613 665 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 GRB14Q14449 540 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 Q3C1V9 767 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 PRR16Q569H4 304 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 KRT79Q5XKE5 535 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 B3GNT9Q6UX72 402 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 MAMDC4Q6UXC1 1216 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 PLEKHH3Q7Z736 793 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 ANKRD13CQ8N6S4 541 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 SOCS4Q8WXH5 440 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 CALML4Q96GE6 196 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 CAPNS2Q96L46 248 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 DACT1Q9NYF0 836 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 TCEAL9Q9UHQ7 104 aa10.88□□□□□ -0.67
USP54-214ENST00000492357 IPO5O00410 1097 aaKnown RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 DKC1O60832 514 aaKnown RBP eCLIP10.87□□□□□ -0.67
USP54-214ENST00000492357 GNRH1P01148 92 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 SLFN14P0C7P3 912 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 ITGB5P18084 799 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 EIF2AK2P19525 551 aaKnown RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 TXKP42681 527 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 NDUFA8P51970 172 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 JAK3P52333 1124 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 ZNF445P59923 1031 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 MRPS9P82933 396 aaKnown RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 KRT76Q01546 638 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 PDE4DQ08499 809 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 SPIRE1Q08AE8 756 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 KRBA2Q6ZNG9 492 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 SMAP1Q8IYB5 467 aaPredicted RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 SYMPKQ92797 1274 aaKnown RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 ZNF577Q9BSK1 485 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 POLR3CQ9BUI4 534 aaPredicted RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 TEKT3Q9BXF9 490 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 DISC1Q9NRI5 854 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 KCNH7Q9NS40 1196 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 SAGE1Q9NXZ1 904 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 ZBTB4Q9P1Z0 1013 aaPredicted RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 NRBP1Q9UHY1 535 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 ZNFX1Q9P2E3 1918 aaKnown RBP10.87□□□□□ -0.67
USP54-214ENST00000492357 PLXNA1Q9UIW2 1896 aa10.87□□□□□ -0.67
USP54-214ENST00000492357 SYNGAP1Q96PV0 1343 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 KIAA1217Q5T5P2 1943 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 A0A1B0GVL5 298 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 SPATA31C2B4DYI2 1134 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 GAS7O60861 476 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 NR1I2O75469 434 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 LIG1P18858 919 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 RPA1P27694 616 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 AMPD3Q01432 767 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 MKRN3Q13064 507 aaKnown RBP10.86□□□□□ -0.67
USP54-214ENST00000492357 NEDD9Q14511 834 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 ARHGEF6Q15052 776 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 E2F4Q16254 413 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 IL17AQ16552 155 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 ZNF792Q3KQV3 632 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 LRCH2Q5VUJ6 765 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 ZNF746Q6NUN9 644 aaPredicted RBP10.86□□□□□ -0.67
USP54-214ENST00000492357 CAVIN1Q6NZI2 390 aaKnown RBP10.86□□□□□ -0.67
USP54-214ENST00000492357 OTOP1Q7RTM1 612 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 GPR142Q7Z601 462 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 CABP7Q86V35 215 aa10.86□□□□□ -0.67
USP54-214ENST00000492357 TRMT44Q8IYL2 757 aaKnown RBP10.86□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms