RNA–Protein interactions for RNA: ENST00000491552.1

MSH5-SAPCD1-206, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

TSL 3

Gene MSH5-SAPCD1, Length 706 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-206ENST00000491552 UBA1P22314 1058 aaKnown RBP18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 RTP1P59025 263 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SEMA3FQ13275 785 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 DHX37Q8IY37 1157 aaKnown RBP18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 C7orf61Q8IZ16 206 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 RASGRP4Q8TDF6 673 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 EMID1Q96A84 441 aaPredicted RBP18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 GPRASP2Q96D09 838 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ALG1Q9BT22 464 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 POLR3EQ9NVU0 708 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 PCDHA4Q9UN74 947 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 NR2E3Q9Y5X4 410 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 UBIAD1Q9Y5Z9 338 aa18.6■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 TNRC18O15417 2968 aaPredicted RBP18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 A6NJR5 290 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 JAK2O60674 1132 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 GGPS1O95749 300 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 MYL3P08590 195 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 FDPSP14324 419 aaKnown RBP18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ITGB5P18084 799 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 ARHGAP4P98171 946 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 SP2Q02086 613 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 LAMC2Q13753 1193 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 CELF3Q5SZQ8 465 aaKnown RBP18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 C1orf53Q5VUE5 145 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 GALNT17Q6IS24 598 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 CXCL17Q6UXB2 119 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 DAGLBQ8NCG7 672 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 AFG1LQ8WV93 481 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 VTI1AQ96AJ9 217 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 CDHR1Q96JP9 859 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 PHF20Q9BVI0 1012 aa18.59■□□□□ 0.57
MSH5-SAPCD1-206ENST00000491552 A0A0U1RQG5 324 aaPredicted RBP18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MMP3P08254 477 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MTMR1Q13613 665 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 TRIM60Q495X7 471 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 BLIDQ8IZY5 108 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PPTC7Q8NI37 304 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MXRA8Q9BRK3 442 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 LLPHQ9BRT6 129 aaKnown RBP18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 JADE2Q9NQC1 790 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KCNJ14Q9UNX9 436 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ATP11BQ9Y2G3 1177 aa18.58■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SORBS3O60504 671 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KPNA6O60684 536 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CYP3A4P08684 503 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MCM2P49736 904 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PURAQ00577 322 aaKnown RBP18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 NEDD9Q14511 834 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 NPY5RQ15761 445 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MYSM1Q5VVJ2 828 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SENP7Q9BQF6 1050 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MLXIPQ9HAP2 919 aa18.57■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 M0R2N6 131 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MAFGO15525 162 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CD2BP2O95400 341 aaKnown RBP18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ZNF76P36508 570 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 DGKDQ16760 1214 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CEP55Q53EZ4 464 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 METTL7BQ6UX53 244 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CRYGNQ8WXF5 182 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SPATA33Q96N06 139 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MTG1Q9BT17 334 aaPredicted RBP18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 GJB4Q9NTQ9 266 aa18.56■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ARVCFO00192 962 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KCNA2P16389 499 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PSMC6P62333 389 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 HMGN5P82970 282 aaKnown RBP18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ITGA7Q13683 1181 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 HSDL1Q3SXM5 330 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PRPF38BQ5VTL8 546 aaKnown RBP18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CYFIP1Q7L576 1253 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 NIPA1Q7RTP0 329 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 GIMAP8Q8ND71 665 aaPredicted RBP18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CYP2W1Q8TAV3 490 aa18.55■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MROH7Q68CQ1 1323 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 H0YGN5 161 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PQBP1O60828 265 aaKnown RBP18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ATP9AO75110 1047 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 HOXD8P13378 290 aaPredicted RBP18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 TRIM29Q14134 588 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ANKRD33Q7Z3H0 272 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KRT25Q7Z3Z0 450 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SLC43A3Q8NBI5 491 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 TMX3Q96JJ7 454 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 SEZ6LQ9BYH1 1024 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 BCAS3Q9H6U6 928 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 KCNH7Q9NS40 1196 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PKD2L1Q9P0L9 805 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MYH7BA7E2Y1 1941 aa18.54■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 FAM86B1E9PN63 330 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 MEIS1O00470 390 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 NOP56O00567 594 aaKnown RBP18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 FAM86B2P0C5J1 330 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 ARP10275 920 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 CDK7P50613 346 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 FOSBP53539 338 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 TLE2Q04725 743 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 PLA2G4DQ86XP0 818 aa18.53■□□□□ 0.56
MSH5-SAPCD1-206ENST00000491552 TBCKQ8TEA7 893 aa18.53■□□□□ 0.56
Retrieved 100 of 20,778 RNA–protein pairs in 20.5 ms