RNA–Protein interactions for RNA: ENST00000490788.1

HMGB1-208, Transcript of high mobility group box 1, humanhuman

TSL 2

Gene HMGB1, Length 425 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-208ENST00000490788 DPF3Q92784 378 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 DNAJC7Q99615 494 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 EPB41L1Q9H4G0 881 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 ZSWIM4Q9H7M6 989 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 GCM1Q9NP62 436 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 NGRNQ9NPE2 291 aaKnown RBP3.24□□□□□ -1.89
HMGB1-208ENST00000490788 SIT1Q9Y3P8 196 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 PCDHA5Q9Y5H7 936 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 HCFC2Q9Y5Z7 792 aa3.24□□□□□ -1.89
HMGB1-208ENST00000490788 FAM47E-STBD1D6RA91 191 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 AQP7O14520 342 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 HGSO14964 777 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 KRT1P04264 644 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 ASGR2P07307 311 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 GNAT1P11488 350 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 LCP1P13796 627 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 GRK2P25098 689 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PMLP29590 882 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 GRK3P35626 688 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 RANGAP1P46060 587 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 SLC6A11P48066 632 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 AFF3P51826 1226 aaKnown RBP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 SPIRE1Q08AE8 756 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 SERINC3Q13530 473 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 RASA3Q14644 834 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 BMS1Q14692 1282 aaKnown RBP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 TESK1Q15569 626 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 LONRF2Q1L5Z9 754 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 YOD1Q5VVQ6 348 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 STEAP3Q658P3 488 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 ETV3LQ6ZN32 361 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 MAMDC2Q7Z304 686 aaPredicted RBP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 IGDCC3Q8IVU1 814 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 ZSWIM2Q8NEG5 633 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PUM2Q8TB72 1066 aaKnown RBP eCLIP3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PTPRN2Q92932 1015 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 OSBP2Q969R2 916 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 C1orf159Q96HA4 380 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PWWP2AQ96N64 755 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 DHRS4Q9BTZ2 278 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 BCAS3Q9H6U6 928 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PCDH18Q9HCL0 1135 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 FBLN5Q9UBX5 448 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PALD1Q9ULE6 856 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 NPFFR2Q9Y5X5 522 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 PMF1-BGLAPU3KQ54 211 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 X6R8D5 127 aa3.23□□□□□ -1.89
HMGB1-208ENST00000490788 GAPVD1Q14C86 1478 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CHD1O14646 1710 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 KIF13AQ9H1H9 1805 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CCDC163A0A0D9SF12 145 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 BLACEA4D250 179 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 FAM221BA6H8Z2 402 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 GSTA4O15217 222 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 SMARCA5O60264 1052 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-208ENST00000490788 DIAPH1O60610 1272 aaKnown RBP3.22□□□□□ -1.89
HMGB1-208ENST00000490788 FAM153BP0C7A2 387 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CYP2C8P10632 490 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 LIMS1P48059 325 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 GPR85P60893 370 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 GABREP78334 506 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 NKX3-2P78367 333 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 ST5P78524 1137 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 FOXO4P98177 505 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 GUCY1A3Q02108 690 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CYP4F3Q08477 520 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 SSPNQ14714 243 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 FAM209AQ5JX71 171 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 DENND5AQ6IQ26 1287 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 STYK1Q6J9G0 422 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 KCNT2Q6UVM3 1135 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CD300LDQ6UXZ3 194 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 LBX2Q6XYB7 198 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 NLRP10Q86W26 655 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 FAM129CQ86XR2 697 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 TRIM48Q8IWZ4 208 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 PHOSPHO1Q8TCT1 267 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 THAP3Q8WTV1 239 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-208ENST00000490788 KCNJ15Q99712 375 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 JAM3Q9BX67 310 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 MYOTQ9UBF9 498 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CDK11AQ9UQ88 783 aaPredicted RBP3.22□□□□□ -1.89
HMGB1-208ENST00000490788 PCDHB4Q9Y5E5 795 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 CEP164Q9UPV0 1460 aa3.22□□□□□ -1.89
HMGB1-208ENST00000490788 IRS2Q9Y4H2 1338 aa3.21□□□□□ -1.89
HMGB1-208ENST00000490788 IRS4O14654 1257 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-208ENST00000490788 SGSM2O43147 1006 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 ADCY3O60266 1144 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 MSCO60682 206 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 EFCAB14O75071 495 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 SASH1O94885 1247 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 SOD2P04179 222 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 MC3RP41968 323 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 CACNB2Q08289 660 aaPredicted RBP3.21□□□□□ -1.9
HMGB1-208ENST00000490788 PAK1Q13153 545 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 FAM47CQ5HY64 1035 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 TTLL7Q6ZT98 887 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 B3GNT8Q7Z7M8 397 aa3.21□□□□□ -1.9
HMGB1-208ENST00000490788 ZC3H7AQ8IWR0 971 aaKnown RBP3.21□□□□□ -1.9
HMGB1-208ENST00000490788 Q8N1Y9 231 aa3.21□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms