RNA–Protein interactions for RNA: ENST00000489562.5

C9orf3-221, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 2

Gene C9orf3, Length 646 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-221ENST00000489562 FLRT1Q9NZU1 646 aa15.73■□□□□ 0.11
C9orf3-221ENST00000489562 CLIC4Q9Y696 253 aa15.73■□□□□ 0.11
C9orf3-221ENST00000489562 DOCK5Q9H7D0 1870 aa15.73■□□□□ 0.11
C9orf3-221ENST00000489562 ADCY3O60266 1144 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 RGS20O76081 388 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 SNAI1O95863 264 aaPredicted RBP15.72■□□□□ 0.11
C9orf3-221ENST00000489562 PTGDRQ13258 359 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 SLC39A14Q15043 492 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 PTPAQ15257 358 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 CCL14Q16627 93 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 CSPP1Q1MSJ5 1256 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 POTEDQ86YR6 584 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 LINC00301Q8NCQ3 95 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 SLAIN1Q8ND83 568 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 CYP2W1Q8TAV3 490 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 KCNG4Q8TDN1 519 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 TRIB2Q92519 343 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 GBP4Q96PP9 640 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 WDR11Q9BZH6 1224 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 KCNMB3Q9NPA1 279 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 KCNH7Q9NS40 1196 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 TFIP11Q9UBB9 837 aaKnown RBP15.72■□□□□ 0.11
C9orf3-221ENST00000489562 WDR81Q562E7 1941 aa15.72■□□□□ 0.11
C9orf3-221ENST00000489562 RBM47A0AV96 593 aaKnown RBP15.71■□□□□ 0.11
C9orf3-221ENST00000489562 SPATA31C2B4DYI2 1134 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 MARCH6O60337 910 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 HMGCRP04035 888 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 CEBPZQ03701 1054 aaKnown RBP15.71■□□□□ 0.11
C9orf3-221ENST00000489562 ACVR2BQ13705 512 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 TTLL4Q14679 1199 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 SEPT14Q6ZU15 432 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 CTU1Q7Z7A3 348 aaKnown RBP15.71■□□□□ 0.11
C9orf3-221ENST00000489562 FBXO16Q8IX29 292 aaPredicted RBP15.71■□□□□ 0.11
C9orf3-221ENST00000489562 GIMAP8Q8ND71 665 aaPredicted RBP15.71■□□□□ 0.11
C9orf3-221ENST00000489562 ETNPPLQ8TBG4 499 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 FERMT2Q96AC1 680 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 SPATA32Q96LK8 384 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 RIT2Q99578 217 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 SENP7Q9BQF6 1050 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 ZNF577Q9BSK1 485 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 FTOQ9C0B1 505 aaKnown RBP eCLIP15.71■□□□□ 0.11
C9orf3-221ENST00000489562 KATNBL1Q9H079 304 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 RCOR1Q9UKL0 485 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 MRVI1Q9Y6F6 885 aa15.71■□□□□ 0.11
C9orf3-221ENST00000489562 IPO5O00410 1097 aaKnown RBP15.7■□□□□ 0.1
C9orf3-221ENST00000489562 SPTLC2O15270 562 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 MSH4O15457 936 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 PPP6R2O75170 966 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 ARP10275 920 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 LBX1P52954 281 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 TMEM266Q2M3C6 531 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 EEPD1Q7L9B9 569 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 C4orf32Q8N8J7 132 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 SLC5A5Q92911 643 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 ZFP91Q96JP5 570 aaPredicted RBP15.7■□□□□ 0.1
C9orf3-221ENST00000489562 MTMR9Q96QG7 549 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 RAB34Q9BZG1 259 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 TMEM60Q9H2L4 133 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 AGO4Q9HCK5 861 aaKnown RBP15.7■□□□□ 0.1
C9orf3-221ENST00000489562 TBC1D22BQ9NU19 505 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 TCEAL9Q9UHQ7 104 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 ZHX1Q9UKY1 873 aaPredicted RBP15.7■□□□□ 0.1
C9orf3-221ENST00000489562 PTPN22Q9Y2R2 807 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 DDX49Q9Y6V7 483 aaKnown RBP15.7■□□□□ 0.1
C9orf3-221ENST00000489562 PCNTO95613 3336 aa15.7■□□□□ 0.1
C9orf3-221ENST00000489562 NFASCO94856 1347 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 ELP1O95163 1332 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 NKRFO15226 690 aaKnown RBP eCLIP15.69■□□□□ 0.1
C9orf3-221ENST00000489562 GRK4P32298 578 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 CYP2C19P33261 490 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 SEMA3FQ13275 785 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 NEDD9Q14511 834 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 PKN2Q16513 984 aaKnown RBP15.69■□□□□ 0.1
C9orf3-221ENST00000489562 IQSEC1Q6DN90 963 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 TAPT1Q6NXT6 567 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 LEO1Q8WVC0 666 aaPredicted RBP15.69■□□□□ 0.1
C9orf3-221ENST00000489562 HAS1Q92839 578 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 SDF4Q9BRK5 362 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 PTCH2Q9Y6C5 1203 aa15.69■□□□□ 0.1
C9orf3-221ENST00000489562 MYH9P35579 1960 aaKnown RBP15.69■□□□□ 0.1
C9orf3-221ENST00000489562 GAS7O60861 476 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 ZNF865P0CJ78 1059 aaPredicted RBP15.68■□□□□ 0.1
C9orf3-221ENST00000489562 CYBAP13498 195 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 ELNP15502 786 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 KCNA2P16389 499 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 LRCH2Q5VUJ6 765 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 CCDC62Q6P9F0 684 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 DTHD1Q6ZMT9 781 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 KRI1Q8N9T8 703 aaKnown RBP15.68■□□□□ 0.1
C9orf3-221ENST00000489562 TEKT3Q9BXF9 490 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 TTC12Q9H892 705 aaPredicted RBP15.68■□□□□ 0.1
C9orf3-221ENST00000489562 DDX41Q9UJV9 622 aaKnown RBP15.68■□□□□ 0.1
C9orf3-221ENST00000489562 PCDHA12Q9UN75 941 aa15.68■□□□□ 0.1
C9orf3-221ENST00000489562 SRPRBQ9Y5M8 271 aaKnown RBP15.68■□□□□ 0.1
C9orf3-221ENST00000489562 GOLGA6L22H0YM25 854 aa15.67■□□□□ 0.1
C9orf3-221ENST00000489562 PSMD10O75832 226 aa15.67■□□□□ 0.1
C9orf3-221ENST00000489562 TXNP10599 105 aaKnown RBP15.67■□□□□ 0.1
C9orf3-221ENST00000489562 AKR1A1P14550 325 aa15.67■□□□□ 0.1
C9orf3-221ENST00000489562 UBA1P22314 1058 aaKnown RBP15.67■□□□□ 0.1
C9orf3-221ENST00000489562 TXKP42681 527 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms