RNA–Protein interactions for RNA: ENST00000489212.2

LIME1-207, Transcript of Lck interacting transmembrane adaptor 1, humanhuman

TSL 5

Gene LIME1, Length 559 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIME1-207ENST00000489212 TM6SF1Q9BZW5 370 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 CYP46A1Q9Y6A2 500 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 UMODL1Q5DID0 1318 aa24.32■■□□□ 1.48
LIME1-207ENST00000489212 CCDC196A0A1B0GTZ2 297 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 SPATA31C2B4DYI2 1134 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 PDIA3P30101 505 aaKnown RBP24.31■■□□□ 1.48
LIME1-207ENST00000489212 CYP2C18P33260 490 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 DGKDQ16760 1214 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 HSDL1Q3SXM5 330 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 PPP1R18Q6NYC8 613 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 NFRKBQ6P4R8 1299 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 BARHL2Q9NY43 387 aa24.31■■□□□ 1.48
LIME1-207ENST00000489212 DOCK5Q9H7D0 1870 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 HOXD8P13378 290 aaPredicted RBP24.3■■□□□ 1.48
LIME1-207ENST00000489212 NTRK3Q16288 839 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 GNPTABQ3T906 1256 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 FAM47CQ5HY64 1035 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 XRRA1Q6P2D8 792 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 SPATA33Q96N06 139 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 NOC4LQ9BVI4 516 aaKnown RBP24.3■■□□□ 1.48
LIME1-207ENST00000489212 HIPK3Q9H422 1215 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 RIC8AQ9NPQ8 531 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 PCDHA6Q9UN73 950 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 PCDHA8Q9Y5H6 950 aa24.3■■□□□ 1.48
LIME1-207ENST00000489212 ZNF286BP0CG31 522 aa24.29■■□□□ 1.48
LIME1-207ENST00000489212 CHMP4BP1P59074 171 aa24.29■■□□□ 1.48
LIME1-207ENST00000489212 PFKFB3Q16875 520 aaPredicted RBP24.29■■□□□ 1.48
LIME1-207ENST00000489212 LARP6Q9BRS8 491 aaKnown RBP24.29■■□□□ 1.48
LIME1-207ENST00000489212 NCOA5Q9HCD5 579 aaKnown RBP24.29■■□□□ 1.48
LIME1-207ENST00000489212 SMCO2A6NFE2 343 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 SPDYE3A6NKU9 549 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 hCG_1984214I3L0E3 225 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 FIBPO43427 364 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 PPFIA3O75145 1194 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 CYP2C9P11712 490 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 CSF2RAP15509 400 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 ADCY7P51828 1080 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 CCT2P78371 535 aaKnown RBP24.28■■□□□ 1.48
LIME1-207ENST00000489212 PKN1Q16512 942 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 C16orf59Q7L2K0 433 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 ZNF713Q8N859 430 aaPredicted RBP24.28■■□□□ 1.48
LIME1-207ENST00000489212 PHKBQ93100 1093 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 MLXIPQ9HAP2 919 aa24.28■■□□□ 1.48
LIME1-207ENST00000489212 PRPF3O43395 683 aaKnown RBP24.27■■□□□ 1.48
LIME1-207ENST00000489212 SCG2P13521 617 aa24.27■■□□□ 1.48
LIME1-207ENST00000489212 ITGB5P18084 799 aa24.27■■□□□ 1.48
LIME1-207ENST00000489212 PTPN11Q06124 597 aaPredicted RBP24.27■■□□□ 1.48
LIME1-207ENST00000489212 PGBD1Q96JS3 809 aa24.27■■□□□ 1.48
LIME1-207ENST00000489212 WNT8AQ9H1J5 351 aa24.27■■□□□ 1.48
LIME1-207ENST00000489212 TELO2Q9Y4R8 837 aa24.27■■□□□ 1.48
LIME1-207ENST00000489212 ADAMTS3O15072 1205 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 PPFIA4O75335 1185 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 F2P00734 622 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 SUPT20HL2P0C7V6 817 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 PSEN2P49810 448 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 PPIGQ13427 754 aaKnown RBP eCLIP24.26■■□□□ 1.476e-9■■■■□ 19.6
LIME1-207ENST00000489212 CYFIP1Q7L576 1253 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 TMEM199Q8N511 208 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 PDRG1Q9NUG6 133 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 TMEM260Q9NX78 707 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 UBIAD1Q9Y5Z9 338 aa24.26■■□□□ 1.47
LIME1-207ENST00000489212 HAS3O00219 553 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 ACRP10323 421 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 IFNAR1P17181 557 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 CLK2P49760 499 aaKnown RBP24.25■■□□□ 1.47
LIME1-207ENST00000489212 CCL23P55773 120 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 NEDD9Q14511 834 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 MFSD10Q14728 455 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 METTL7BQ6UX53 244 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 NLRX1Q86UT6 975 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 SESTD1Q86VW0 696 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 GPRASP2Q96D09 838 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 CTAGE1Q96RT6 745 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 BUD13Q9BRD0 619 aaKnown RBP eCLIP24.25■■□□□ 1.472e-8■■■■□ 20.1
LIME1-207ENST00000489212 ALG1Q9BT22 464 aa24.25■■□□□ 1.47
LIME1-207ENST00000489212 ATP9AO75110 1047 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 SEC24BO95487 1268 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 KIAA0753Q2KHM9 967 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 TMEM240Q5SV17 173 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 GDF6Q6KF10 455 aaPredicted RBP24.24■■□□□ 1.47
LIME1-207ENST00000489212 TEX2Q8IWB9 1127 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 RNPC3Q96LT9 517 aaKnown RBP24.24■■□□□ 1.47
LIME1-207ENST00000489212 SENP7Q9BQF6 1050 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 C16orf70Q9BSU1 422 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 SLC26A6Q9BXS9 759 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 ANO3Q9BYT9 981 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 HDAC6Q9UBN7 1215 aa24.24■■□□□ 1.47
LIME1-207ENST00000489212 KCNA2P16389 499 aa24.23■■□□□ 1.47
LIME1-207ENST00000489212 GPR153Q6NV75 609 aa24.23■■□□□ 1.47
LIME1-207ENST00000489212 VWCEQ96DN2 955 aa24.23■■□□□ 1.47
LIME1-207ENST00000489212 ZNF274Q96GC6 653 aaPredicted RBP24.23■■□□□ 1.47
LIME1-207ENST00000489212 GPR20Q99678 358 aa24.23■■□□□ 1.47
LIME1-207ENST00000489212 KATNAL1Q9BW62 490 aa24.23■■□□□ 1.47
LIME1-207ENST00000489212 RNF26Q9BY78 433 aaPredicted RBP24.23■■□□□ 1.47
LIME1-207ENST00000489212 ESYT2A0FGR8 921 aa24.22■■□□□ 1.47
LIME1-207ENST00000489212 FOSP01100 380 aaPredicted RBP24.22■■□□□ 1.47
LIME1-207ENST00000489212 LGALS2P05162 132 aa24.22■■□□□ 1.47
LIME1-207ENST00000489212 ANAPC15P60006 121 aa24.22■■□□□ 1.47
LIME1-207ENST00000489212 PTGISQ16647 500 aa24.22■■□□□ 1.47
LIME1-207ENST00000489212 CYP2W1Q8TAV3 490 aa24.22■■□□□ 1.47
Retrieved 100 of 20,778 RNA–protein pairs in 38.9 ms