RNA–Protein interactions for RNA: ENST00000488325.5

HLA-DOB-209, Transcript of major histocompatibility complex, class II, DO beta, humanhuman

Gene HLA-DOB, Length 1,188 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DOB-209ENST00000488325 TMEM39AQ9NV64 488 aa13.72□□□□□ -0.21
HLA-DOB-209ENST00000488325 MORC2Q9Y6X9 1032 aaPredicted RBP13.72□□□□□ -0.21
HLA-DOB-209ENST00000488325 PQBP1O60828 265 aaKnown RBP13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 IGHA2P01877 340 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 PTPREP23469 700 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 MRPL12P52815 198 aaKnown RBP13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 BACE1P56817 501 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 NHLH1Q02575 133 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 SKIV2LQ15477 1246 aaKnown RBP13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 MCTP2Q6DN12 878 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 TYW1BQ6NUM6 668 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 PIK3AP1Q6ZUJ8 805 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 FBXO11Q86XK2 927 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 REXO1Q8N1G1 1221 aaKnown RBP13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 GTF3C2Q8WUA4 911 aaPredicted RBP13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 CUL5Q93034 780 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 RIC8AQ9NPQ8 531 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 PRR12Q9ULL5 1215 aa13.71□□□□□ -0.21
HLA-DOB-209ENST00000488325 A0A1W2PQ27 194 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 A0A1W2PQ64 194 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 A0A1W2PQD8 194 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 M0R2N6 131 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 SEPT4O43236 478 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 PTPAQ15257 358 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 RAB30Q15771 203 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 KIAA1755Q5JYT7 1200 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 TTC38Q5R3I4 469 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 RASIP1Q5U651 963 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 ADALQ6DHV7 355 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 CAVIN1Q6NZI2 390 aaKnown RBP13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 CCDC73Q6ZRK6 1079 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 PGBD1Q96JS3 809 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 C12orf42Q96LP6 360 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 NKX2-4Q9H2Z4 354 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 MSRAQ9UJ68 235 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 PNMA2Q9UL42 364 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 PCDHA6Q9UN73 950 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 PCDHA8Q9Y5H6 950 aa13.7□□□□□ -0.22
HLA-DOB-209ENST00000488325 PRR33A8MZF0 331 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 TLL1O43897 1013 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 CUTAO60888 179 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 CNMDO75829 334 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 FDX1P10109 184 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 TOB1P50616 345 aaPredicted RBP13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 CCNA1P78396 465 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 GRB14Q14449 540 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 NONOQ15233 471 aaKnown RBP eCLIP13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 TMEM240Q5SV17 173 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 CCDC183Q5T5S1 534 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 C16orf59Q7L2K0 433 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 HERVK_113Q902F9 699 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 SLF1Q9BQI6 1058 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 RANBP17Q9H2T7 1088 aaKnown RBP13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 SLC28A3Q9HAS3 691 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 EIF4ENIF1Q9NRA8 985 aaKnown RBP13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 PCDHA7Q9UN72 937 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 PHF24Q9UPV7 400 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 RABGAP1Q9Y3P9 1069 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 CTDP1Q9Y5B0 961 aaPredicted RBP13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 PCDHA1Q9Y5I3 950 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 IVNS1ABPQ9Y6Y0 642 aa13.69□□□□□ -0.22
HLA-DOB-209ENST00000488325 LRRC37A2A6NM11 1700 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 PI4K2BG5E9Z4 385 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 PPP1R11O60927 126 aaPredicted RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 LETM1O95202 739 aaPredicted RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 ATP2B1P20020 1258 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 CACNB1Q02641 598 aaPredicted RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 FAAP100Q0VG06 881 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 ORC2Q13416 577 aaPredicted RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 TPRNQ4KMQ1 711 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 KRI1Q8N9T8 703 aaKnown RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 PRPF38AQ8NAV1 312 aaKnown RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 MRPS27Q92552 414 aaKnown RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 KIFC2Q96AC6 838 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 GZF1Q9H116 711 aaPredicted RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 PSTPIP2Q9H939 334 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 EMILIN3Q9NT22 766 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 DDX19AQ9NUU7 478 aaKnown RBP13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 PCDHB6Q9Y5E3 794 aa13.68□□□□□ -0.22
HLA-DOB-209ENST00000488325 FAM205CA6NFA0 338 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 TIMP1P01033 207 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 VCAM1P19320 739 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 PPIGQ13427 754 aaKnown RBP eCLIP13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 EARS2Q5JPH6 523 aaKnown RBP13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 CCDC174Q6PII3 467 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 FSIP1Q8NA03 581 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 RASGRP4Q8TDF6 673 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 NAP1L4Q99733 375 aaKnown RBP13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 TANGO6Q9C0B7 1094 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 YBX2Q9Y2T7 364 aaKnown RBP13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 MRPL11Q9Y3B7 192 aaKnown RBP13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 TRANK1O15050 2925 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 WDFY4Q6ZS81 3184 aa13.67□□□□□ -0.22
HLA-DOB-209ENST00000488325 ABCB11O95342 1321 aa13.66□□□□□ -0.22
HLA-DOB-209ENST00000488325 ZBED4O75132 1171 aa13.66□□□□□ -0.22
HLA-DOB-209ENST00000488325 CMA1P23946 247 aa13.66□□□□□ -0.22
HLA-DOB-209ENST00000488325 MARCKSP29966 332 aaPredicted RBP13.66□□□□□ -0.22
HLA-DOB-209ENST00000488325 AP3B2Q13367 1082 aa13.66□□□□□ -0.22
HLA-DOB-209ENST00000488325 INF2Q27J81 1249 aa13.66□□□□□ -0.22
HLA-DOB-209ENST00000488325 JAKMIP3Q5VZ66 844 aa13.66□□□□□ -0.22
Retrieved 100 of 20,778 RNA–protein pairs in 55.9 ms