RNA–Protein interactions for RNA: ENST00000486758.5

SHROOM3-208, Transcript of shroom family member 3, human

TSL 2

Gene SHROOM3, Length 3,766 nt, Biotype retained intron, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SHROOM3-208	ENST00000486758	TSGA10	Q9BZW7	698 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	PCDHA13	Q9Y5I0	950 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	KDM3B	Q7LBC6	1761 aa		13.58	□□□□□ -0.23
SHROOM3-208	ENST00000486758	C5	P01031	1676 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PMS1	P54277	932 aa	Known RBP	13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	HERC4	Q5GLZ8	1057 aa	Predicted RBP	13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	WDR93	Q6P2C0	686 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	OSBPL9	Q96SU4	736 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	GOLPH3	Q9H4A6	298 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	RBM12	Q9NTZ6	932 aa	Known RBP	13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	RCCD1	A6NED2	376 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP17L5	A8MUK1	530 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	LGALS16	A8MUM7	142 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CYP4A11	Q02928	519 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TBC1D10B	Q4KMP7	808 aa	Predicted RBP	13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CCDC25	Q86WR0	208 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZNF526	Q8TF50	670 aa	Predicted RBP	13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	DISC1	Q9NRI5	854 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	XDH	P47989	1333 aa		13.58	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TCP1	P17987	556 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TMOD1	P28289	359 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	HDLBP	Q00341	1268 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PFKFB3	Q16875	520 aa	Predicted RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SPICE1	Q8N0Z3	855 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	MGARP	Q8TDB4	240 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PYM1	Q9BRP8	204 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	BRIP1	Q9BX63	1249 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	VEZT	Q9HBM0	779 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	GEMIN8	Q9NWZ8	242 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	FAM205A	Q6ZU69	1335 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	BICDL2	A1A5D9	508 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TMED8	Q6PL24	325 aa	Predicted RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	NEK8	Q86SG6	692 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TSEN2	Q8NCE0	465 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SARS	P49591	514 aa	Known RBP	13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SEC23A	Q15436	765 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KIAA0753	Q2KHM9	967 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ARFGAP2	Q8N6H7	521 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CEP95	Q96GE4	821 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	GGT7	Q9UJ14	662 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZBTB21	Q9ULJ3	1066 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PLAA	Q9Y263	795 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	STK38L	Q9Y2H1	464 aa		13.57	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CDK8	P49336	464 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	GRIK5	Q16478	980 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	HIBCH	Q6NVY1	386 aa	Predicted RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	DNAAF5	Q86Y56	855 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CEP89	Q96ST8	783 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	NOVA2	Q9UNW9	492 aa	Known RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	MEIS1	O00470	390 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	MEFV	O15553	781 aa	Predicted RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SCP2	P22307	547 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	POLR2F	P61218	127 aa	Known RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TNNC1	P63316	161 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	UBXN2A	P68543	259 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZBED6	P86452	979 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CDKAL1	Q5VV42	579 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	DDX42	Q86XP3	938 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZNF579	Q8NAF0	562 aa	Known RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	VIPAS39	Q9H9C1	493 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	USP40	Q9NVE5	1235 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CNTNAP5	Q8WYK1	1306 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	MYO5A	Q9Y4I1	1855 aa	Known RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	HLA-DOA	P06340	250 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KRT13	P13646	458 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	LSP1	P33241	339 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	NEDD9	Q14511	834 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CCDC155	Q8N6L0	562 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	MICAL1	Q8TDZ2	1067 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	NUP58	Q9BVL2	599 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CDCA7	Q9BWT1	371 aa	Predicted RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SNX12	Q9UMY4	172 aa		13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	REXO2	Q9Y3B8	237 aa	Known RBP	13.56	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SKAP2	O75563	359 aa	Predicted RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ADCY7	P51828	1080 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ATP2C1	P98194	919 aa	Predicted RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SNCB	Q16143	134 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZNF512B	Q96KM6	892 aa	Predicted RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	LIMA1	Q9UHB6	759 aa	Known RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	LRRC53	A6NM62	1247 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	PSMD14	O00487	310 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	LONP1	P36776	959 aa	Known RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	FAM133B	Q5BKY9	247 aa	Known RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CACNA2D3	Q8IZS8	1091 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CCT8L2	Q96SF2	557 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	DBNDD1	Q9H9R9	158 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KLC4	Q9NSK0	619 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	HAUS2	Q9NVX0	235 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CTDP1	Q9Y5B0	961 aa	Predicted RBP	13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	CD2AP	Q9Y5K6	639 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	NWD2	Q9ULI1	1742 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TDP2	O95551	362 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ZFYVE27	Q5T4F4	411 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	KRT25	Q7Z3Z0	450 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	RDH13	Q8NBN7	331 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	ADAMTS1	Q9UHI8	967 aa		13.55	□□□□□ -0.24
SHROOM3-208	ENST00000486758	TMEM110-MUSTN1	A8MSY1	372 aa		13.54	□□□□□ -0.24
SHROOM3-208	ENST00000486758	SLC1A4	P43007	532 aa		13.54	□□□□□ -0.24

Retrieved 100 of 20,778 RNA–protein pairs in 44.7 ms