RNA–Protein interactions for RNA: ENST00000485867.5

SMC4-217, Transcript of structural maintenance of chromosomes 4, humanhuman

TSL 3

Gene SMC4, Length 629 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC4-217ENST00000485867 C1orf127Q8N9H9 656 aa8.26□□□□□ -1.09
SMC4-217ENST00000485867 FOXD4L4Q8WXT5 416 aaPredicted RBP8.26□□□□□ -1.09
SMC4-217ENST00000485867 USP6NLQ92738 828 aa8.26□□□□□ -1.09
SMC4-217ENST00000485867 BADQ92934 168 aa8.26□□□□□ -1.09
SMC4-217ENST00000485867 RAXQ9Y2V3 346 aa8.26□□□□□ -1.09
SMC4-217ENST00000485867 LRRFIP2Q9Y608 721 aaKnown RBP8.26□□□□□ -1.09
SMC4-217ENST00000485867 ENTPD3O75355 529 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 ACPPP15309 386 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 RGS3P49796 1198 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 HMGCS2P54868 508 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 DNM1Q05193 864 aaKnown RBP8.25□□□□□ -1.09
SMC4-217ENST00000485867 PABPC4Q13310 644 aaKnown RBP eCLIP8.25□□□□□ -1.09
SMC4-217ENST00000485867 WDR43Q15061 677 aaKnown RBP eCLIP8.25□□□□□ -1.09
SMC4-217ENST00000485867 FAM117BQ6P1L5 589 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 VGLL2Q8N8G2 317 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 APBA2Q99767 749 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 C1QTNF1Q9BXJ1 281 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 CEP41Q9BYV8 373 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 TXNRD2Q9NNW7 524 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 PRDM5Q9NQX1 630 aaPredicted RBP8.25□□□□□ -1.09
SMC4-217ENST00000485867 USP40Q9NVE5 1235 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 ATP11BQ9Y2G3 1177 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 KIF16BQ96L93 1317 aa8.25□□□□□ -1.09
SMC4-217ENST00000485867 DDTLA6NHG4 134 aaPredicted RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 A6NHS1 94 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 GRM8O00222 908 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 DNM1LO00429 736 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 DDX3YO15523 660 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 PEX10O60683 326 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 MZF1P28698 734 aaPredicted RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 PRDX5P30044 214 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 RGS2P41220 211 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 EIF1AXP47813 144 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 MRPS5P82675 430 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 SPP2Q13103 211 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 PDE3AQ14432 1141 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 RALBP1Q15311 655 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 TWISTNBQ3B726 338 aaPredicted RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 LRRC24Q50LG9 513 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 METTL24Q5JXM2 366 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 BEND3Q5T5X7 828 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 ZSCAN29Q8IWY8 852 aaPredicted RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 WDR66Q8TBY9 1149 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 TSR2Q969E8 191 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 KLHDC7BQ96G42 594 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 FAM46AQ96IP4 442 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 RNPC3Q96LT9 517 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 IDI2Q9BXS1 227 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 CHRDQ9H2X0 955 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 PDLIM7Q9NR12 457 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 DZANK1Q9NVP4 752 aa8.24□□□□□ -1.09
SMC4-217ENST00000485867 DDX20Q9UHI6 824 aaKnown RBP8.24□□□□□ -1.09
SMC4-217ENST00000485867 GBF1Q92538 1859 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 KRTAP9-6A0A140TA67 174 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 TRIM43BA6NCK2 446 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 F6X3S4 739 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 H3BRJ5 948 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 APAF1O14727 1248 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 DHX15O43143 795 aaKnown RBP8.23□□□□□ -1.09
SMC4-217ENST00000485867 PDE8BO95263 885 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 CES1P23141 567 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 MPSTP25325 297 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 MAPK4P31152 587 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 EPHB4P54760 987 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 IRX3P78415 501 aaPredicted RBP8.23□□□□□ -1.09
SMC4-217ENST00000485867 SNX17Q15036 470 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 DUOXA2Q1HG44 320 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 UVSSAQ2YD98 709 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 TRIM60Q495X7 471 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 AKNAD1Q5T1N1 836 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 UBASH3BQ8TF42 649 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 GTF3C2Q8WUA4 911 aaPredicted RBP8.23□□□□□ -1.09
SMC4-217ENST00000485867 PPM1EQ8WY54 764 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 LPAR1Q92633 364 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 WNT8BQ93098 351 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 TRIM43Q96BQ3 446 aaPredicted RBP8.23□□□□□ -1.09
SMC4-217ENST00000485867 NECAB3Q96P71 396 aaPredicted RBP8.23□□□□□ -1.09
SMC4-217ENST00000485867 PORCNQ9H237 461 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 ZNF576Q9H609 170 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 STOML1Q9UBI4 398 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 SIPA1L1O43166 1804 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 SMCHD1A6NHR9 2005 aa8.23□□□□□ -1.09
SMC4-217ENST00000485867 MYBBP1AQ9BQG0 1328 aaKnown RBP8.23□□□□□ -1.09
SMC4-217ENST00000485867 GSC2O15499 205 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 MSCO60682 206 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 IGLV1-40P01703 118 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 LDHBP07195 334 aaKnown RBP8.22□□□□□ -1.09
SMC4-217ENST00000485867 PCSK2P16519 638 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 FGFR2P21802 821 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 ZEB1P37275 1124 aaPredicted RBP8.22□□□□□ -1.09
SMC4-217ENST00000485867 CD97P48960 835 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 SLC39A5Q6ZMH5 540 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 GPR142Q7Z601 462 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 GPRC5AQ8NFJ5 357 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 TIFAQ96CG3 184 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 KAZALD1Q96I82 304 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 SUCLG2Q96I99 432 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 SNX27Q96L92 541 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 HHIPQ96QV1 700 aa8.22□□□□□ -1.09
SMC4-217ENST00000485867 P2RX7Q99572 595 aaKnown RBP8.22□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 23.5 ms