RNA–Protein interactions for RNA: ENST00000485140.1

VPS50-217, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 4

Gene VPS50, Length 558 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-217ENST00000485140 CHAMP1Q96JM3 812 aa5.55□□□□□ -1.52
VPS50-217ENST00000485140 SPATA25Q9BR10 227 aa5.55□□□□□ -1.52
VPS50-217ENST00000485140 CLDND1Q9NY35 253 aa5.55□□□□□ -1.52
VPS50-217ENST00000485140 FBLN5Q9UBX5 448 aa5.55□□□□□ -1.52
VPS50-217ENST00000485140 GJB6O95452 261 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 FGFR1P11362 822 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 DNAJA1P31689 397 aaKnown RBP5.54□□□□□ -1.52
VPS50-217ENST00000485140 DLX2Q07687 328 aaPredicted RBP5.54□□□□□ -1.52
VPS50-217ENST00000485140 SPIRE1Q08AE8 756 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 KIZQ2M2Z5 673 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 ZNF761Q86XN6 746 aaPredicted RBP5.54□□□□□ -1.52
VPS50-217ENST00000485140 MCF2L2Q86YR7 1114 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 CKAP2LQ8IYA6 745 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 TMEM145Q8NBT3 493 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 RCBTB1Q8NDN9 531 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 LCORQ96JN0 433 aaPredicted RBP5.54□□□□□ -1.52
VPS50-217ENST00000485140 GORASP1Q9BQQ3 440 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 AARSD1Q9BTE6 412 aaKnown RBP5.54□□□□□ -1.52
VPS50-217ENST00000485140 TRIM55Q9BYV6 548 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 DTLQ9NZJ0 730 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 PCDHA2Q9Y5H9 948 aa5.54□□□□□ -1.52
VPS50-217ENST00000485140 E9PSI1 815 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 TADA3O75528 432 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 PPP2R2AP63151 447 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 ANKS3Q6ZW76 656 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 SYT8Q8NBV8 401 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 BDH2Q9BUT1 245 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 RXFP1Q9HBX9 757 aa5.53□□□□□ -1.52
VPS50-217ENST00000485140 SPATA6Q9NWH7 488 aaPredicted RBP5.53□□□□□ -1.52
VPS50-217ENST00000485140 MROH6A6NGR9 719 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 CAPNS1P04632 268 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 FPR2P25090 351 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 ITGA1P56199 1179 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 ZC3H6P61129 1189 aaKnown RBP5.52□□□□□ -1.53
VPS50-217ENST00000485140 RTP5Q14D33 572 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 SKOR2Q2VWA4 1001 aaPredicted RBP5.52□□□□□ -1.53
VPS50-217ENST00000485140 ZC3H12BQ5HYM0 836 aaKnown RBP5.52□□□□□ -1.53
VPS50-217ENST00000485140 CCDC103Q8IW40 242 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 PUM2Q8TB72 1066 aaKnown RBP eCLIP5.52□□□□□ -1.53
VPS50-217ENST00000485140 C1orf159Q96HA4 380 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 SAMD11Q96NU1 681 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 IPO9Q96P70 1041 aaKnown RBP5.52□□□□□ -1.53
VPS50-217ENST00000485140 KRTAP9-8Q9BYQ0 159 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 PDGFDQ9GZP0 370 aaPredicted RBP5.52□□□□□ -1.53
VPS50-217ENST00000485140 L2HGDHQ9H9P8 463 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 SLC6A20Q9NP91 592 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 MYOTQ9UBF9 498 aa5.52□□□□□ -1.53
VPS50-217ENST00000485140 TRAV20A0A0B4J274 112 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 A0A1W2PQU0 124 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 TCRBV5S2A0A599 114 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 B2RBV5 119 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 STK10O94804 968 aaKnown RBP5.51□□□□□ -1.53
VPS50-217ENST00000485140 PLATP00750 562 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 RGL3Q3MIN7 710 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 PRAMEF18Q5VWM3 479 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 MRM1Q6IN84 353 aaKnown RBP5.51□□□□□ -1.53
VPS50-217ENST00000485140 NLRP10Q86W26 655 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 PPIL4Q8WUA2 492 aaKnown RBP eCLIP5.51□□□□□ -1.53
VPS50-217ENST00000485140 ARMC5Q96C12 935 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 NOX5Q96PH1 765 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 ALG1Q9BT22 464 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 IER2Q9BTL4 223 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 MYRFQ9Y2G1 1151 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 SIT1Q9Y3P8 196 aa5.51□□□□□ -1.53
VPS50-217ENST00000485140 ITGB3P05106 788 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 CNR2P34972 360 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 GPR85P60893 370 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 CYP4F3Q08477 520 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 IFRD2Q12894 506 aaPredicted RBP5.5□□□□□ -1.53
VPS50-217ENST00000485140 SMAD4Q13485 552 aaKnown RBP5.5□□□□□ -1.53
VPS50-217ENST00000485140 RAB33AQ14088 237 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 IFNL3Q8IZI9 196 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 TMEM168Q9H0V1 697 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 ADAM7Q9H2U9 754 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 BCAS3Q9H6U6 928 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 FTSJ1Q9UET6 329 aa5.5□□□□□ -1.53
VPS50-217ENST00000485140 FAM47E-STBD1D6RA91 191 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 AQP7O14520 342 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 GSTA4O15217 222 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 TBX1O43435 398 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 KLF4O43474 513 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 CYP1A1P04798 512 aaPredicted RBP5.49□□□□□ -1.53
VPS50-217ENST00000485140 ZNF28P17035 718 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 LONRF2Q1L5Z9 754 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 CR1LQ2VPA4 569 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 PRR31Q5SQ13 230 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 SOGA3Q5TF21 947 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 STYK1Q6J9G0 422 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 TEPPQ6URK8 271 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 MAMDC2Q7Z304 686 aaPredicted RBP5.49□□□□□ -1.53
VPS50-217ENST00000485140 LRP10Q7Z4F1 713 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 PHF20Q9BVI0 1012 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 HIRIP3Q9BW71 556 aaPredicted RBP5.49□□□□□ -1.53
VPS50-217ENST00000485140 BARX1Q9HBU1 254 aaPredicted RBP5.49□□□□□ -1.53
VPS50-217ENST00000485140 ASH2LQ9UBL3 628 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 TMEFF2Q9UIK5 374 aaPredicted RBP5.49□□□□□ -1.53
VPS50-217ENST00000485140 PLA2G2DQ9UNK4 145 aa5.49□□□□□ -1.53
VPS50-217ENST00000485140 A0A1B0GTL3 188 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 GNAT1P11488 350 aa5.48□□□□□ -1.53
VPS50-217ENST00000485140 GRK2P25098 689 aa5.48□□□□□ -1.53
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms