RNA–Protein interactions for RNA: ENST00000478095.1

HDAC6-222, Transcript of histone deacetylase 6, human

TSL 4

Gene HDAC6, Length 620 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
HDAC6-222	ENST00000478095	SENP6	Q9GZR1	1112 aa	Predicted RBP	11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	AP5M1	Q9H0R1	490 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	UPF3A	Q9H1J1	476 aa	Known RBP	11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	SPC25	Q9HBM1	224 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	KCNJ14	Q9UNX9	436 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	MRVI1	Q9Y6F6	885 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	STK36	Q9NRP7	1315 aa		11.76	□□□□□ -0.53
HDAC6-222	ENST00000478095	LRRC37A2	A6NM11	1700 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	CTAGE5	O15320	804 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	COL6A1	P12109	1028 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	FDPS	P14324	419 aa	Known RBP	11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	CAPN2	P17655	700 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	GNA11	P29992	359 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	AP3B2	Q13367	1082 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	KCNA10	Q16322	511 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	GNAS	Q5JWF2	1037 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	PCNX4	Q63HM2	1172 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	CCDC62	Q6P9F0	684 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	KLHDC9	Q8NEP7	349 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	ZSCAN31	Q96LW9	406 aa	Predicted RBP	11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	ALG1	Q9BT22	464 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	GLT8D2	Q9H1C3	349 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	EHMT1	Q9H9B1	1298 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	SH3GLB2	Q9NR46	395 aa		11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	SH2B1	Q9NRF2	756 aa	Predicted RBP	11.75	□□□□□ -0.53
HDAC6-222	ENST00000478095	RBBP6	Q7Z6E9	1792 aa	Known RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	ZNFX1	Q9P2E3	1918 aa	Known RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	FOS	P01100	380 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	ASGR1	P07306	291 aa		11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	ITGB5	P18084	799 aa		11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	UBA1	P22314	1058 aa	Known RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	ACLY	P53396	1101 aa		11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	SEMA3F	Q13275	785 aa		11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	FSCN1	Q16658	493 aa	Known RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	CCSAP	Q6IQ19	270 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	PDCD7	Q8N8D1	485 aa	Known RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	INPP4A	Q96PE3	977 aa	Predicted RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	DDX41	Q9UJV9	622 aa	Known RBP	11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095	PHF24	Q9UPV7	400 aa		11.74	□□□□□ -0.53
HDAC6-222	ENST00000478095		A0A1W2PQ45	241 aa	Predicted RBP	11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095		A0A1W2PQY0	241 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	NKRF	O15226	690 aa	Known RBP eCLIP	11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	GH1	P01241	217 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	CST5	P28325	142 aa	Predicted RBP	11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	SREBF1	P36956	1147 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	ARHGAP4	P98171	946 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	SP2	Q02086	613 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	ARHGAP1	Q07960	439 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	NPY5R	Q15761	445 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	LRRC26	Q2I0M4	334 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	GNPTAB	Q3T906	1256 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	XRRA1	Q6P2D8	792 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	CXCL17	Q6UXB2	119 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	NLRX1	Q86UT6	975 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	BLID	Q8IZY5	108 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	BICD2	Q8TD16	824 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	WASF1	Q92558	559 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	DPF3	Q92784	378 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	TMX3	Q96JJ7	454 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	HTATIP2	Q9BUP3	242 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	PHF20	Q9BVI0	1012 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	BCAS3	Q9H6U6	928 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	PKD2L1	Q9P0L9	805 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	PCDHA4	Q9UN74	947 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095		Q9Y3F1	56 aa		11.73	□□□□□ -0.53
HDAC6-222	ENST00000478095	MYH6	P13533	1939 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	MOXD2P	A6NHM9	499 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	FIBP	O43427	364 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	STAM2	O75886	525 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	GGPS1	O95749	300 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	MYL3	P08590	195 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	XBP1	P17861	261 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	CPT1A	P50416	773 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	NKX3-2	P78367	333 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	GUCY1B3	Q02153	619 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	MTMR1	Q13613	665 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	TEX2	Q8IWB9	1127 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	DHX37	Q8IY37	1157 aa	Known RBP	11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	PCSK9	Q8NBP7	692 aa	Known RBP	11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	CYP2W1	Q8TAV3	490 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	AFG1L	Q8WV93	481 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	TSEN34	Q9BSV6	310 aa	Known RBP	11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	STARD7	Q9NQZ5	370 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	PCDH10	Q9P2E7	1040 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	UBIAD1	Q9Y5Z9	338 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	MCM3AP	O60318	1980 aa		11.72	□□□□□ -0.53
HDAC6-222	ENST00000478095	SPATA31C2	B4DYI2	1134 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	ZEB2	O60315	1214 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	ICAM3	P32942	547 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	ZNF76	P36508	570 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	PSMC6	P62333	389 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	SP4	Q02446	784 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	TRIM60	Q495X7	471 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	CELF3	Q5SZQ8	465 aa	Known RBP	11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	MCTP2	Q6DN12	878 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	KCNV1	Q6PIU1	500 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	C7orf61	Q8IZ16	206 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	FAM184A	Q8NB25	1140 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	DAGLB	Q8NCG7	672 aa		11.71	□□□□□ -0.53
HDAC6-222	ENST00000478095	OXER1	Q8TDS5	423 aa		11.71	□□□□□ -0.53

Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms