RNA–Protein interactions for RNA: ENST00000475218.2

UPF3A-204, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 1 (best)

Gene UPF3A, Length 1,791 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-204ENST00000475218 OTOP2Q7RTS6 562 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 DHX37Q8IY37 1157 aaKnown RBP16.29■□□□□ 0.2
UPF3A-204ENST00000475218 FANCBQ8NB91 859 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 LZTS2Q9BRK4 669 aa16.29■□□□□ 0.2
UPF3A-204ENST00000475218 TRIP12Q14669 1992 aaPredicted RBP16.29■□□□□ 0.2
UPF3A-204ENST00000475218 GGPS1O95749 300 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 FGBP02675 491 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 GNAQP50148 359 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 DGKDQ16760 1214 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CCDC82Q8N4S0 544 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 MYLIPQ8WY64 445 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 KCNB2Q92953 911 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 SLC12A7Q9Y666 1083 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 TMEM265A0A087WTH1 108 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 IQCF3P0C7M6 154 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CALM1P0DP23 149 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CALM2P0DP24 149 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CALM3P0DP25 149 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CASTP20810 708 aaKnown RBP16.28■□□□□ 0.2
UPF3A-204ENST00000475218 ICAM3P32942 547 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 PSEN2P49810 448 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CHMP4BP1P59074 171 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 GRIN2CQ14957 1233 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 DHX32Q7L7V1 743 aaKnown RBP16.28■□□□□ 0.2
UPF3A-204ENST00000475218 MICU3Q86XE3 530 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 WNT8BQ93098 351 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CCDC136Q96JN2 1154 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 FAM217BQ9NTX9 383 aaPredicted RBP16.28■□□□□ 0.2
UPF3A-204ENST00000475218 HDAC6Q9UBN7 1215 aa16.28■□□□□ 0.2
UPF3A-204ENST00000475218 CNTNAP5Q8WYK1 1306 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 SPATA31C2B4DYI2 1134 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 PITPNM1O00562 1244 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 TGFB3P10600 412 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 CPA1P15085 419 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 PTGISQ16647 500 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 RNF20Q5VTR2 975 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 TYW1BQ6NUM6 668 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 KCNV1Q6PIU1 500 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 SPATA33Q96N06 139 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 C16orf70Q9BSU1 422 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 RTEL1Q9NZ71 1219 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 GTF2IRD1Q9UHL9 959 aa16.27■□□□□ 0.2
UPF3A-204ENST00000475218 MFSD10Q14728 455 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 SLC17A8Q8NDX2 589 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 TIFAQ96CG3 184 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 SEC63Q9UGP8 760 aaKnown RBP16.26■□□□□ 0.19
UPF3A-204ENST00000475218 YBX2Q9Y2T7 364 aaKnown RBP16.26■□□□□ 0.19
UPF3A-204ENST00000475218 PTPRSQ13332 1948 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 PPFIA4O75335 1185 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 ZNF200P98182 395 aaPredicted RBP16.26■□□□□ 0.19
UPF3A-204ENST00000475218 RBL2Q08999 1139 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 UBE2SQ16763 222 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 KIAA0753Q2KHM9 967 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 TRIM71Q2Q1W2 868 aaKnown RBP16.26■□□□□ 0.19
UPF3A-204ENST00000475218 PCNX4Q63HM2 1172 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 TRAF7Q6Q0C0 670 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 DEFB128Q7Z7B8 93 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 ALG1Q9BT22 464 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 ZNF576Q9H609 170 aa16.26■□□□□ 0.19
UPF3A-204ENST00000475218 TCTN1Q2MV58 587 aa16.25■□□□□ 0.19
UPF3A-204ENST00000475218 SMARCC2Q8TAQ2 1214 aa16.25■□□□□ 0.19
UPF3A-204ENST00000475218 VCANP13611 3396 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 STAM2O75886 525 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 CDC27P30260 824 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 HOXC8P31273 242 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 HSPA4P34932 840 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 RABGGTBP53611 331 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 WWC2Q6AWC2 1192 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 RPUSD2Q8IZ73 545 aaKnown RBP16.24■□□□□ 0.19
UPF3A-204ENST00000475218 PSTPIP2Q9H939 334 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 SNX14Q9Y5W7 946 aa16.24■□□□□ 0.19
UPF3A-204ENST00000475218 FIBPO43427 364 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 PFKMP08237 780 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 MYOGP15173 224 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 ITGB5P18084 799 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 CYFIP1Q7L576 1253 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 GPR20Q99678 358 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 ZBTB43O43298 467 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 ATP9AO75110 1047 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 LGALS2P05162 132 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 CKBP12277 381 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 RFC2P35250 354 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 BFSP2Q13515 415 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 MBTPS1Q14703 1052 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 RTN1Q16799 776 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 METTL7BQ6UX53 244 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 HEATR3Q7Z4Q2 680 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 C7orf31Q8N865 590 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 CUL5Q93034 780 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 KATNAL1Q9BW62 490 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 MLXIPQ9HAP2 919 aa16.23■□□□□ 0.19
UPF3A-204ENST00000475218 KLF18A0A0U1RQI7 1052 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 NBNO60934 754 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 KCNA2P16389 499 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 KRT32Q14532 448 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 GNPTABQ3T906 1256 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 XRRA1Q6P2D8 792 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 TRIM50Q86XT4 487 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 CAGE1Q8TC20 777 aa16.22■□□□□ 0.19
UPF3A-204ENST00000475218 AFAP1L1Q8TED9 768 aa16.22■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms