RNA–Protein interactions for RNA: ENST00000474655.6

SYNE1-222, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,798 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-222ENST00000474655 KIAA1024Q9UPX6 916 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 RABGAP1Q9Y3P9 1069 aa13.65□□□□□ -0.22
SYNE1-222ENST00000474655 PITPNM2Q9BZ72 1349 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 POLR2AP24928 1970 aaKnown RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 POTEB3A0JP26 581 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 FRMD3A2A2Y4 597 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 POTECB2RU33 542 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 AKR1B15C9JRZ8 316 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 KIF2AO00139 706 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 CCP110O43303 1012 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 SLC12A3P55017 1021 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 POTEBQ6S5H4 581 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 DYMQ7RTS9 669 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 APOBEC3FQ8IUX4 373 aaKnown RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 CSGALNACT2Q8N6G5 542 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 CYP2W1Q8TAV3 490 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 UPF1Q92900 1129 aaKnown RBP eCLIP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 BAG1Q99933 345 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 POLR3CQ9BUI4 534 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 SEMA6BQ9H3T3 888 aa13.64□□□□□ -0.23
SYNE1-222ENST00000474655 BMP2KQ9NSY1 1161 aaPredicted RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 MAP3K20Q9NYL2 800 aaKnown RBP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP13.64□□□□□ -0.23
SYNE1-222ENST00000474655 A0A1W2PQC6 194 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 LGALS16A8MUM7 142 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 E9PMD0 336 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PSMD10O75832 226 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 TUBB4AP04350 444 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 GYPCP04921 128 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PLA2G4BP0C869 781 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 FDX1P10109 184 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 STAT3P40763 770 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 ADKP55263 362 aaKnown RBP13.63□□□□□ -0.23
SYNE1-222ENST00000474655 GOLGA8FQ08AF8 430 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 GOLGA8DPQ0D2H9 430 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 TRIM14Q14142 442 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PTPN14Q15678 1187 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 FAM114A1Q8IWE2 563 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 GPC2Q8N158 579 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 SLC5A5Q92911 643 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 CCDC51Q96ER9 411 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PPP1R13BQ96KQ4 1090 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 NAA15Q9BXJ9 866 aaKnown RBP13.63□□□□□ -0.23
SYNE1-222ENST00000474655 VPS16Q9H269 839 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 SLC38A10Q9HBR0 1119 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 SLC39A2Q9NP94 309 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 GPRC5DQ9NZD1 345 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PNMA2Q9UL42 364 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PAXBP1Q9Y5B6 917 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 RPTORQ8N122 1335 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 MFAP3LO75121 409 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 CYP11B2P19099 503 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 ZNF76P36508 570 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 USP14P54578 494 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 LRRC63Q05C16 580 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 RBL2Q08999 1139 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 COASYQ13057 564 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PPP2R5CQ13362 524 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 CEP55Q53EZ4 464 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 OTOP1Q7RTM1 612 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PPFIBP1Q86W92 1011 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 CNGA4Q8IV77 575 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 SCYL3Q8IZE3 742 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 SYT2Q8N9I0 419 aaPredicted RBP13.63□□□□□ -0.23
SYNE1-222ENST00000474655 CLEC4DQ8WXI8 215 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 HPS3Q969F9 1004 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 EMILIN3Q9NT22 766 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 TRMT1Q9NXH9 659 aaKnown RBP13.63□□□□□ -0.23
SYNE1-222ENST00000474655 TAB2Q9NYJ8 693 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PCDHA2Q9Y5H9 948 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 PPP2R3BQ9Y5P8 575 aa13.63□□□□□ -0.23
SYNE1-222ENST00000474655 COL11A1P12107 1806 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-222ENST00000474655 MEIS1O00470 390 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 VCAM1P19320 739 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 MUTP22033 750 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 ARSHQ5FYA8 562 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 CEP135Q66GS9 1140 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 B3GNT9Q6UX72 402 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 MB21D1Q8N884 522 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 AGBL1Q96MI9 1066 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 HSD17B14Q9BPX1 270 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 PANK4Q9NVE7 773 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 MAGEC2Q9UBF1 373 aaPredicted RBP13.62□□□□□ -0.23
SYNE1-222ENST00000474655 CCPG1Q9ULG6 757 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 PPP1R9AQ9ULJ8 1098 aa13.62□□□□□ -0.23
SYNE1-222ENST00000474655 UQCRHLA0A096LP55 91 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 POTEFA5A3E0 1075 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 UQCRHP07919 91 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 POTEIP0CG38 1075 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 BCRP11274 1271 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 IDEP14735 1019 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 LMNB1P20700 586 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 DNM2P50570 870 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 BACE1P56817 501 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 SETQ01105 290 aaPredicted RBP13.61□□□□□ -0.23
SYNE1-222ENST00000474655 ZCWPW2Q504Y3 356 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 ANGEL2Q5VTE6 544 aaKnown RBP13.61□□□□□ -0.23
SYNE1-222ENST00000474655 NCAPH2Q6IBW4 605 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 POTEGQ6S5H5 508 aa13.61□□□□□ -0.23
SYNE1-222ENST00000474655 POTEEQ6S8J3 1075 aa13.61□□□□□ -0.23
Retrieved 100 of 20,778 RNA–protein pairs in 40.8 ms