RNA–Protein interactions for RNA: ENST00000472044.1

PTCD3-209, Transcript of pentatricopeptide repeat domain 3, human

TSL 3

Gene PTCD3, Length 293 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTCD3-209	ENST00000472044	SEPT7	Q16181	437 aa	Known RBP	5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	ARHGAP44	Q17R89	818 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	TMEM177	Q53S58	311 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	CYP4F22	Q6NT55	531 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	PKN3	Q6P5Z2	889 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	OTOP1	Q7RTM1	612 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	CABP7	Q86V35	215 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	ANKRD13A	Q8IZ07	590 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	PPIL4	Q8WUA2	492 aa	Known RBP eCLIP	5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	KIRREL1	Q96J84	757 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	PDGFD	Q9GZP0	370 aa	Predicted RBP	5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	RNF32	Q9H0A6	362 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	CBLC	Q9ULV8	474 aa		5.42	□□□□□ -1.54
PTCD3-209	ENST00000472044	hCG_2014768	A0A024R1R8	64 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	TCRBV5S4A2T	A0A5A2	114 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	ZNF561-AS1	K7EIQ3	104 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044		M0R2C6	588 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	KRIT1	O00522	736 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	KPNA6	O60684	536 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	EYA4	O95677	639 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	F2	P00734	622 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	NTRK1	P04629	796 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	CYBB	P04839	570 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	DBH	P09172	617 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	GNAT1	P11488	350 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	PDE6A	P16499	860 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	TACR1	P25103	407 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	DNM2	P50570	870 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	IGBP1	P78318	339 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	NR1I3	Q14994	352 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	FYB2	Q5VWT5	728 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	PAQR3	Q6TCH7	311 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	HHIPL2	Q6UWX4	724 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	DCP2	Q8IU60	420 aa	Known RBP	5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	CHST14	Q8NCH0	376 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	UHMK1	Q8TAS1	419 aa	Known RBP	5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	LEO1	Q8WVC0	666 aa	Predicted RBP	5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	SEC14L1	Q92503	715 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	KCNJ15	Q99712	375 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	CABP5	Q9NP86	173 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	CATSPERZ	Q9NTU4	200 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	B4GALT6	Q9UBX8	382 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	ATP8A1	Q9Y2Q0	1164 aa		5.41	□□□□□ -1.54
PTCD3-209	ENST00000472044	BIN1	O00499	593 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	HGS	O14964	777 aa	Predicted RBP	5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	NKRF	O15226	690 aa	Known RBP eCLIP	5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	MAFK	O60675	156 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	AMY2A	P04746	511 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	CPE	P16870	476 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	AMY2B	P19961	511 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	CNGA1	P29973	690 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	SCNN1B	P51168	640 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	NFKB2	Q00653	900 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	DSG1	Q02413	1049 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	CT47A1	Q5JQC4	288 aa	Predicted RBP	5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	BICRAL	Q6AI39	1079 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	OSTM1	Q86WC4	334 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	UBR7	Q8N806	425 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	PHOSPHO1	Q8TCT1	267 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	SH3RF2	Q8TEC5	729 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	INTS4	Q96HW7	963 aa	Known RBP	5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	SLC6A17	Q9H1V8	727 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	SMOC1	Q9H4F8	434 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	SMURF1	Q9HCE7	757 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	NUDT5	Q9UKK9	219 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	ZNF652	Q9Y2D9	606 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	NUB1	Q9Y5A7	615 aa		5.4	□□□□□ -1.54
PTCD3-209	ENST00000472044	SGSM2	O43147	1006 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZBTB7A	O95365	584 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	MPO	P05164	745 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	GLI1	P08151	1106 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	COL6A2	P12110	1019 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	YBX3	P16989	372 aa	Known RBP eCLIP	5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	BPI	P17213	487 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	GALK1	P51570	392 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	EPHA5	P54756	1037 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	JAM2	P57087	298 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	STEAP3	Q658P3	488 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	ARHGAP36	Q6ZRI8	547 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	STRA8	Q7Z7C7	330 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	IRF2BP1	Q8IU81	584 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	SIRT2	Q8IXJ6	389 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	NLGN4X	Q8N0W4	816 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	C2orf69	Q8N8R5	385 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	OR2W6P	Q8NHA6	318 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	PIP4K2C	Q8TBX8	421 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	PEX11G	Q96HA9	241 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	FAM126A	Q9BYI3	521 aa	Predicted RBP	5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	DSE	Q9UL01	958 aa		5.39	□□□□□ -1.55
PTCD3-209	ENST00000472044	HRK	O00198	91 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZEB2	O60315	1214 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	BRINP1	O60477	761 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	CLASP2	O75122	1294 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZBTB48	P10074	688 aa	Predicted RBP	5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ITGB5	P18084	799 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ANAPC15	P60006	121 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	YBX1	P67809	324 aa	Known RBP	5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	TMEM62	Q0P6H9	643 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	SLC9A5	Q14940	896 aa		5.38	□□□□□ -1.55
PTCD3-209	ENST00000472044	ZSWIM9	Q86XI8	627 aa		5.38	□□□□□ -1.55

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