RNA–Protein interactions for RNA: ENST00000470942.1

HDAC6-218, Transcript of histone deacetylase 6, humanhuman

TSL 3

Gene HDAC6, Length 668 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC6-218ENST00000470942 PCDHA8Q9Y5H6 950 aa18.02■□□□□ 0.48
HDAC6-218ENST00000470942 STXBP3O00186 592 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 CYP2C18P33260 490 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 ADCY7P51828 1080 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 CCT2P78371 535 aaKnown RBP18.01■□□□□ 0.47
HDAC6-218ENST00000470942 AKAP17AQ02040 695 aaKnown RBP18.01■□□□□ 0.47
HDAC6-218ENST00000470942 TYW1BQ6NUM6 668 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 NLRX1Q86UT6 975 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 TMEM199Q8N511 208 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 PPTC7Q8NI37 304 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 INPP4AQ96PE3 977 aaPredicted RBP18.01■□□□□ 0.47
HDAC6-218ENST00000470942 UPF3BQ9BZI7 483 aaKnown RBP18.01■□□□□ 0.47
HDAC6-218ENST00000470942 HIPK3Q9H422 1215 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 EHMT1Q9H9B1 1298 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 RIC8AQ9NPQ8 531 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 BARHL2Q9NY43 387 aa18.01■□□□□ 0.47
HDAC6-218ENST00000470942 SMCO2A6NFE2 343 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 SPATA31C2B4DYI2 1134 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 FIBPO43427 364 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 SUPT20HL2P0C7V6 817 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 PDIA3P30101 505 aaKnown RBP18■□□□□ 0.47
HDAC6-218ENST00000470942 ICAM3P32942 547 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 EPHB4P54760 987 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 PPIGQ13427 754 aaKnown RBP eCLIP18■□□□□ 0.474e-8■■□□□ 12.8
HDAC6-218ENST00000470942 TOB2Q14106 344 aaPredicted RBP18■□□□□ 0.47
HDAC6-218ENST00000470942 NFRKBQ6P4R8 1299 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 LARP6Q9BRS8 491 aaKnown RBP18■□□□□ 0.47
HDAC6-218ENST00000470942 ALG1Q9BT22 464 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 PDRG1Q9NUG6 133 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 NID2Q14112 1375 aa18■□□□□ 0.47
HDAC6-218ENST00000470942 PRPF3O43395 683 aaKnown RBP17.99■□□□□ 0.47
HDAC6-218ENST00000470942 PPFIA3O75145 1194 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 PPFIA4O75335 1185 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 ZNF286BP0CG31 522 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 CYP2C9P11712 490 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 SCG2P13521 617 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 PSEN2P49810 448 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 PTPN11Q06124 597 aaPredicted RBP17.99■□□□□ 0.47
HDAC6-218ENST00000470942 SEMA3FQ13275 785 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 NEDD9Q14511 834 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 PFKFB3Q16875 520 aaPredicted RBP17.99■□□□□ 0.47
HDAC6-218ENST00000470942 HSDL1Q3SXM5 330 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 CYFIP1Q7L576 1253 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 KAT2BQ92831 832 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 PHKBQ93100 1093 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 NOC4LQ9BVI4 516 aaKnown RBP17.99■□□□□ 0.47
HDAC6-218ENST00000470942 GLT8D2Q9H1C3 349 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 BCAS3Q9H6U6 928 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 NCOA5Q9HCD5 579 aaKnown RBP17.99■□□□□ 0.47
HDAC6-218ENST00000470942 NOD1Q9Y239 953 aa17.99■□□□□ 0.47
HDAC6-218ENST00000470942 UMODL1Q5DID0 1318 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 NOP56O00567 594 aaKnown RBP17.98■□□□□ 0.47
HDAC6-218ENST00000470942 EIF5BO60841 1220 aaKnown RBP17.98■□□□□ 0.47
HDAC6-218ENST00000470942 CSF2RAP15509 400 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 CCL23P55773 120 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 EVCP57679 992 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 PGBD1Q96JS3 809 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 RNPC3Q96LT9 517 aaKnown RBP17.98■□□□□ 0.47
HDAC6-218ENST00000470942 KATNAL1Q9BW62 490 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 SLC26A6Q9BXS9 759 aa17.98■□□□□ 0.47
HDAC6-218ENST00000470942 FOSP01100 380 aaPredicted RBP17.97■□□□□ 0.47
HDAC6-218ENST00000470942 ACRP10323 421 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 MFSD10Q14728 455 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 KIAA0753Q2KHM9 967 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 C7orf31Q8N865 590 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 CCDC12Q8WUD4 166 aaPredicted RBP17.97■□□□□ 0.47
HDAC6-218ENST00000470942 GPRASP2Q96D09 838 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 ANO3Q9BYT9 981 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 TMEM260Q9NX78 707 aa17.97■□□□□ 0.47
HDAC6-218ENST00000470942 TRIP12Q14669 1992 aaPredicted RBP17.97■□□□□ 0.47
HDAC6-218ENST00000470942 CPLX1O14810 134 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 HOXD8P13378 290 aaPredicted RBP17.96■□□□□ 0.47
HDAC6-218ENST00000470942 IFNAR1P17181 557 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 ITGB5P18084 799 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 SP4Q02446 784 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 STK3Q13188 491 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 NTRK3Q16288 839 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 PKN1Q16512 942 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 PTGISQ16647 500 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 JAKMIP3Q5VZ66 844 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 METTL7BQ6UX53 244 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 TEX2Q8IWB9 1127 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 GIMAP8Q8ND71 665 aaPredicted RBP17.96■□□□□ 0.47
HDAC6-218ENST00000470942 ZNF274Q96GC6 653 aaPredicted RBP17.96■□□□□ 0.47
HDAC6-218ENST00000470942 CDHR1Q96JP9 859 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 SENP7Q9BQF6 1050 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 BUD13Q9BRD0 619 aaKnown RBP eCLIP17.96■□□□□ 0.47
HDAC6-218ENST00000470942 RNF26Q9BY78 433 aaPredicted RBP17.96■□□□□ 0.47
HDAC6-218ENST00000470942 C6orf50Q9HD87 102 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 PKD2L1Q9P0L9 805 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 HDAC6Q9UBN7 1215 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 UBIAD1Q9Y5Z9 338 aa17.96■□□□□ 0.47
HDAC6-218ENST00000470942 SZT2Q5T011 3432 aa17.95■□□□□ 0.46
HDAC6-218ENST00000470942 F2P00734 622 aa17.95■□□□□ 0.46
HDAC6-218ENST00000470942 ANAPC15P60006 121 aa17.95■□□□□ 0.46
HDAC6-218ENST00000470942 AP3B2Q13367 1082 aa17.95■□□□□ 0.46
HDAC6-218ENST00000470942 MTMR1Q13613 665 aa17.95■□□□□ 0.46
HDAC6-218ENST00000470942 GDF6Q6KF10 455 aaPredicted RBP17.95■□□□□ 0.46
HDAC6-218ENST00000470942 C16orf59Q7L2K0 433 aa17.95■□□□□ 0.46
HDAC6-218ENST00000470942 SCLYQ96I15 445 aa17.95■□□□□ 0.46
Retrieved 100 of 20,778 RNA–protein pairs in 53.2 ms