RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 EHHADHQ08426 723 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 DACT2Q5SW24 774 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 FAM114A1Q8IWE2 563 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 AKT1S1Q96B36 256 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 ERGIC2Q96RQ1 377 aa21.22■□□□□ 0.99
VIM-203ENST00000469543 ZNHIT6Q9NWK9 470 aaKnown RBP21.22■□□□□ 0.99
VIM-203ENST00000469543 FRMD4AQ9P2Q2 1039 aaPredicted RBP21.22■□□□□ 0.99
VIM-203ENST00000469543 RRAGAQ7L523 313 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 PODNQ7Z5L7 613 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 GUF1Q8N442 669 aaKnown RBP21.21■□□□□ 0.99
VIM-203ENST00000469543 HAUS4Q9H6D7 363 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 NLRC4Q9NPP4 1024 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 PI4KBQ9UBF8 816 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 SCN9AQ15858 1988 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 CTAGE15A4D2H0 777 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 TRAF5O00463 557 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 ZMYND10O75800 440 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 CTAGE8P0CG41 777 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 CTAGE6Q86UF2 777 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 CTAGE4Q8IX94 777 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 PRMT6Q96LA8 375 aaPredicted RBP21.21■□□□□ 0.99
VIM-203ENST00000469543 CCDC42Q96M95 316 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 ANO3Q9BYT9 981 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 ABCB6Q9NP58 842 aa21.21■□□□□ 0.99
VIM-203ENST00000469543 BRWD3Q6RI45 1802 aa21.2■□□□□ 0.99
VIM-203ENST00000469543 ERICH4A6NGS2 130 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 LRRC53A6NM62 1247 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 ICA1Q05084 483 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 GABPB1Q06547 395 aaPredicted RBP21.2■□□□□ 0.98
VIM-203ENST00000469543 SAMD1Q6SPF0 538 aaPredicted RBP21.2■□□□□ 0.98
VIM-203ENST00000469543 PSMB7Q99436 277 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 A0A1W2PRG0 241 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 FAM86B1E9PN63 330 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 FAM86B2P0C5J1 330 aa21.2■□□□□ 0.98
VIM-203ENST00000469543 GH2P01242 217 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 CASP5P51878 434 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 MRPS25P82663 173 aaKnown RBP21.19■□□□□ 0.98
VIM-203ENST00000469543 KCNMA1Q12791 1236 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 HERC4Q5GLZ8 1057 aaPredicted RBP21.19■□□□□ 0.98
VIM-203ENST00000469543 NUP58Q9BVL2 599 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 MLXIPQ9HAP2 919 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 PLA2G4BP0C869 781 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 ORC2Q13416 577 aaPredicted RBP21.19■□□□□ 0.98
VIM-203ENST00000469543 SMC1AQ14683 1233 aaKnown RBP21.19■□□□□ 0.98
VIM-203ENST00000469543 ENOX2Q16206 610 aaKnown RBP21.19■□□□□ 0.98
VIM-203ENST00000469543 ARSHQ5FYA8 562 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 TRAPPC11Q7Z392 1133 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 MYOCDQ8IZQ8 938 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 PLAGL2Q9UPG8 496 aa21.19■□□□□ 0.98
VIM-203ENST00000469543 PSMD14O00487 310 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 EIF4A3P38919 411 aaKnown RBP21.18■□□□□ 0.98
VIM-203ENST00000469543 ECE1P42892 770 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 CYP4A11Q02928 519 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 GPBP1Q86WP2 473 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 CATSPER3Q86XQ3 398 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 TBC1D5Q92609 795 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 GDAP1L1Q96MZ0 367 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 MYO1AQ9UBC5 1043 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 CAPN6Q9Y6Q1 641 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 PDE2AO00408 941 aaPredicted RBP21.18■□□□□ 0.98
VIM-203ENST00000469543 NDUFB10O96000 172 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 KRT83P78385 493 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 MAN2A1Q16706 1144 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 FAM26FQ5R3K3 315 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 BEND6Q5SZJ8 279 aaPredicted RBP21.18■□□□□ 0.98
VIM-203ENST00000469543 CCDC17Q96LX7 622 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 TRIM34Q9BYJ4 488 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 SALL4Q9UJQ4 1053 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 SCAF8Q9UPN6 1271 aaKnown RBP21.18■□□□□ 0.98
VIM-203ENST00000469543 SAR1BQ9Y6B6 198 aa21.18■□□□□ 0.98
VIM-203ENST00000469543 CCDC151A5D8V7 595 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 OAS2P29728 719 aaKnown RBP21.17■□□□□ 0.98
VIM-203ENST00000469543 CYLC1P35663 651 aaPredicted RBP21.17■□□□□ 0.98
VIM-203ENST00000469543 GFPT1Q06210 699 aaPredicted RBP21.17■□□□□ 0.98
VIM-203ENST00000469543 PABPC4Q13310 644 aaKnown RBP eCLIP21.17■□□□□ 0.981e-7■■■□□ 16.8
VIM-203ENST00000469543 RETREG2Q8NC44 543 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 EHD4Q9H223 541 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 KCNMB3Q9NPA1 279 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 JADE2Q9NQC1 790 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 EIF3CLB5ME19 914 aaKnown RBP21.17■□□□□ 0.98
VIM-203ENST00000469543 H3BQF6 201 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 KRT86O43790 486 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 N4BP1O75113 896 aaKnown RBP21.17■□□□□ 0.98
VIM-203ENST00000469543 ARHGAP4P98171 946 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 SEMA3FQ13275 785 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 COBLL1Q53SF7 1204 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 KIAA1755Q5JYT7 1200 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 STRIP1Q5VSL9 837 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 PPP1R18Q6NYC8 613 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 SCFD1Q8WVM8 642 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 EIF3CQ99613 913 aaKnown RBP21.17■□□□□ 0.98
VIM-203ENST00000469543 IKZF4Q9H2S9 585 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 MYH10P35580 1976 aa21.17■□□□□ 0.98
VIM-203ENST00000469543 CYP11B2P19099 503 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 CXCR5P32302 372 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 ARID5AQ03989 594 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 ABCB5Q2M3G0 1257 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 MKL1Q969V6 931 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 PCDHA2Q9Y5H9 948 aa21.16■□□□□ 0.98
VIM-203ENST00000469543 OPLAHO14841 1288 aa21.16■□□□□ 0.98
Retrieved 100 of 20,778 RNA–protein pairs in 95.5 ms