RNA–Protein interactions for RNA: ENST00000465461.6

CUX1-207, Transcript of cut like homeobox 1, humanhuman

TSL 3

Gene CUX1, Length 502 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-207ENST00000465461 HTATIP2Q9BUP3 242 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 PHF20Q9BVI0 1012 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 GLT8D2Q9H1C3 349 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 PCDHA4Q9UN74 947 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 UBIAD1Q9Y5Z9 338 aa13.33□□□□□ -0.28
CUX1-207ENST00000465461 DOCK5Q9H7D0 1870 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 SPATA31C2B4DYI2 1134 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 NKRFO15226 690 aaKnown RBP eCLIP13.32□□□□□ -0.28
CUX1-207ENST00000465461 EDIL3O43854 480 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 GGPS1O95749 300 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 ARP10275 920 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 SREBF1P36956 1147 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 NKX3-2P78367 333 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 ARHGAP4P98171 946 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 GUCY1B3Q02153 619 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 GNPTABQ3T906 1256 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 TRIM60Q495X7 471 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 NLRX1Q86UT6 975 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 DHX37Q8IY37 1157 aaKnown RBP13.32□□□□□ -0.28
CUX1-207ENST00000465461 C7orf61Q8IZ16 206 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 PCSK9Q8NBP7 692 aaKnown RBP13.32□□□□□ -0.28
CUX1-207ENST00000465461 MXRA8Q9BRK3 442 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 TSEN34Q9BSV6 310 aaKnown RBP13.32□□□□□ -0.28
CUX1-207ENST00000465461 EHMT1Q9H9B1 1298 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 JADE2Q9NQC1 790 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 STARD7Q9NQZ5 370 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 SH2B1Q9NRF2 756 aaPredicted RBP13.32□□□□□ -0.28
CUX1-207ENST00000465461 MYH7BA7E2Y1 1941 aa13.32□□□□□ -0.28
CUX1-207ENST00000465461 MOXD2PA6NHM9 499 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 FAM86B1E9PN63 330 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 M0R2N6 131 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 FIBPO43427 364 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 EVI5O60447 810 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 STAM2O75886 525 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 MMP3P08254 477 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 FAM86B2P0C5J1 330 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 ICAM3P32942 547 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 ZNF76P36508 570 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 RTP1P59025 263 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 CHMP4BP1P59074 171 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 SP4Q02446 784 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 HSDL1Q3SXM5 330 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 EARS2Q5JPH6 523 aaKnown RBP13.31□□□□□ -0.28
CUX1-207ENST00000465461 CELF3Q5SZQ8 465 aaKnown RBP13.31□□□□□ -0.28
CUX1-207ENST00000465461 MYSM1Q5VVJ2 828 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 XRRA1Q6P2D8 792 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 CYFIP1Q7L576 1253 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 BICD2Q8TD16 824 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 WASF1Q92558 559 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 MLXIPQ9HAP2 919 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 ATP11BQ9Y2G3 1177 aa13.31□□□□□ -0.28
CUX1-207ENST00000465461 MKI67P46013 3256 aaKnown RBP13.3□□□□□ -0.28
CUX1-207ENST00000465461 FAM205CA6NFA0 338 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 A6NJR5 290 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 ZEB2O60315 1214 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 SYN1P17600 705 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 CPT1AP50416 773 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 PURAQ00577 322 aaKnown RBP13.3□□□□□ -0.28
CUX1-207ENST00000465461 NR5A1Q13285 461 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 MTMR1Q13613 665 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 LAMC2Q13753 1193 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 KCNV1Q6PIU1 500 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 DAGLBQ8NCG7 672 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 TBCKQ8TEA7 893 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 CRYGNQ8WXF5 182 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 GLT1D1Q96MS3 346 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 SPATA33Q96N06 139 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 LLPHQ9BRT6 129 aaKnown RBP13.3□□□□□ -0.28
CUX1-207ENST00000465461 RNF39Q9H2S5 420 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 ZMYND8Q9ULU4 1186 aaPredicted RBP13.3□□□□□ -0.28
CUX1-207ENST00000465461 GRIN2DO15399 1336 aa13.3□□□□□ -0.28
CUX1-207ENST00000465461 ZNF286BP0CG31 522 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 TGFB3P10600 412 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 KCNA2P16389 499 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 XBP1P17861 261 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 INF2Q27J81 1249 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 CEP55Q53EZ4 464 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 KRT40Q6A162 431 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 PLA2G4DQ86XP0 818 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 FAM184AQ8NB25 1140 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 GPRASP2Q96D09 838 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 KCNH7Q9NS40 1196 aa13.29□□□□□ -0.28
CUX1-207ENST00000465461 RNF216Q9NWF9 866 aaPredicted RBP13.29□□□□□ -0.28
CUX1-207ENST00000465461 IGLV3-22A0A075B6J6 115 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 BTBD18B2RXH4 712 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 H0YGN5 161 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 DDX39AO00148 427 aaKnown RBP13.28□□□□□ -0.28
CUX1-207ENST00000465461 MEIS1O00470 390 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 PQBP1O60828 265 aaKnown RBP13.28□□□□□ -0.28
CUX1-207ENST00000465461 CYP3A4P08684 503 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 TLE2Q04725 743 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 ITGA7Q13683 1181 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 NEDD9Q14511 834 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 PRR16Q569H4 304 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 GALNT17Q6IS24 598 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 PIK3AP1Q6ZUJ8 805 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 PPTC7Q8NI37 304 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 GJA10Q969M2 543 aa13.28□□□□□ -0.28
CUX1-207ENST00000465461 AGO4Q9HCK5 861 aaKnown RBP13.28□□□□□ -0.28
CUX1-207ENST00000465461 POLR3EQ9NVU0 708 aa13.28□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 51.7 ms