RNA–Protein interactions for RNA: ENST00000463477.5

PTPRD-207, Transcript of protein tyrosine phosphatase, receptor type D, humanhuman

TSL 1 (best) BASIC

Gene PTPRD, Length 1,697 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRD-207ENST00000463477 BTNL9Q6UXG8 535 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 FCHSD1Q86WN1 690 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 VSTM4Q8IW00 320 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 TRMT44Q8IYL2 757 aaKnown RBP11.17□□□□□ -0.62
PTPRD-207ENST00000463477 ABRAQ8N0Z2 381 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 DAGLBQ8NCG7 672 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 KIFC2Q96AC6 838 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 C16orf45Q96MC5 204 aaPredicted RBP11.17□□□□□ -0.62
PTPRD-207ENST00000463477 GSDMAQ96QA5 445 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 LZTS2Q9BRK4 669 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 KAT14Q9H8E8 782 aa11.17□□□□□ -0.62
PTPRD-207ENST00000463477 HOXC6P09630 235 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 PDHBP11177 359 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 CYP2B6P20813 491 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 RGS2P41220 211 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 UBXN2AP68543 259 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 SEMA3FQ13275 785 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 PTPN14Q15678 1187 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 EARS2Q5JPH6 523 aaKnown RBP11.16□□□□□ -0.62
PTPRD-207ENST00000463477 WDR78Q5VTH9 848 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 KCTD1Q719H9 257 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 NCAPG2Q86XI2 1143 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 TEX13BQ9BXU2 312 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 TMX1Q9H3N1 280 aa11.16□□□□□ -0.62
PTPRD-207ENST00000463477 FAM205CA6NFA0 338 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 SERPINC1P01008 464 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 ATP1A3P13637 1013 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 ELNP15502 786 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 SMARCA1P28370 1054 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 SPECC1Q5M775 1068 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 GPATCH4Q5T3I0 446 aaKnown RBP11.15□□□□□ -0.62
PTPRD-207ENST00000463477 CEP135Q66GS9 1140 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 PNMA1Q8ND90 353 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 CCDC148Q8NFR7 591 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 TMEM106CQ9BVX2 250 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 FANCLQ9NW38 375 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 BIN2Q9UBW5 565 aaPredicted RBP11.15□□□□□ -0.62
PTPRD-207ENST00000463477 PRR12Q9ULL5 1215 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 CTDP1Q9Y5B0 961 aaPredicted RBP11.15□□□□□ -0.62
PTPRD-207ENST00000463477 BRCA2P51587 3418 aa11.15□□□□□ -0.62
PTPRD-207ENST00000463477 M0R2N6 131 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 HMGCRP04035 888 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 PRR29P0C7W0 189 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 FCER1AP12319 257 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 LONP1P36776 959 aaKnown RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 NLRP5P59047 1200 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 ZNF543Q08ER8 600 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 DPYDQ12882 1025 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 IKQ13123 557 aaPredicted RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 TBX2Q13207 712 aaPredicted RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 PTGDRQ13258 359 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 E2F4Q16254 413 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 ISM2Q6H9L7 571 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 USP49Q70CQ1 688 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 DHX30Q7L2E3 1194 aaKnown RBP eCLIP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 BLIDQ8IZY5 108 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 CPXCR1Q8N123 301 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 ANKRD7Q92527 254 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 SYMPKQ92797 1274 aaKnown RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 PCDHA4Q9UN74 947 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 MTMR7Q9Y216 660 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 PALM3A6NDB9 673 aaPredicted RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 INHAP05111 366 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 ADORA2AP29274 412 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 SOX10P56693 466 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 MTFR1Q15390 333 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 CCDC96Q2M329 555 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 E4F1Q66K89 784 aaPredicted RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 SNRNP48Q6IEG0 339 aaKnown RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 TTBK2Q6IQ55 1244 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 RASGRP2Q7LDG7 609 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 DPP9Q86TI2 863 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 IQUBQ8NA54 791 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 TRIB2Q92519 343 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 PAGE5Q96GU1 130 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 APBA2Q99767 749 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 SPZ1Q9BXG8 430 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 RAVER2Q9HCJ3 691 aaKnown RBP11.14□□□□□ -0.63
PTPRD-207ENST00000463477 SLC5A4Q9NY91 659 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 MAD2L2Q9UI95 211 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 NFE2L3Q9Y4A8 694 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 RIPK3Q9Y572 518 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 PARP14Q460N5 1801 aa11.14□□□□□ -0.63
PTPRD-207ENST00000463477 A0A0G2JMZ2 1700 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 ZNF536O15090 1300 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 A0A087X0B3 334 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 POTEFA5A3E0 1075 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 USP27XA6NNY8 438 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 LAD1O00515 517 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 COBLO75128 1261 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 IGHA2P01877 340 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 GJB1P08034 283 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 CCL5P13501 91 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 CAPN2P17655 700 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 ATP2B1P20020 1258 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 SLC16A2P36021 539 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 RBM10P98175 930 aaKnown RBP11.13□□□□□ -0.63
PTPRD-207ENST00000463477 CUL4BQ13620 913 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 MAP3K21Q5TCX8 1036 aa11.13□□□□□ -0.63
PTPRD-207ENST00000463477 SYDE2Q5VT97 1194 aa11.13□□□□□ -0.63
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms