RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 PEX11GQ96HA9 241 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 CAAP1Q9H8G2 361 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 IFT57Q9NWB7 429 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 COQ6Q9Y2Z9 468 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 NUB1Q9Y5A7 615 aa5.92□□□□□ -1.46
VPS41-210ENST00000462429 GSG1L2A8MUP6 293 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 NUDT19A8MXV4 375 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 F8W031 263 aaPredicted RBP5.91□□□□□ -1.46
VPS41-210ENST00000462429 ABLIM1O14639 778 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 HGSO14964 777 aaPredicted RBP5.91□□□□□ -1.46
VPS41-210ENST00000462429 KPNA6O60684 536 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 CKMP06732 381 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 VIL1P09327 827 aaKnown RBP5.91□□□□□ -1.46
VPS41-210ENST00000462429 KCNA6P17658 529 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 SDHBP21912 280 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 STAT3P40763 770 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 GPR19Q15760 415 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 TMEM177Q53S58 311 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 EMC4Q5J8M3 183 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 CT47A1Q5JQC4 288 aaPredicted RBP5.91□□□□□ -1.46
VPS41-210ENST00000462429 STEAP3Q658P3 488 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 CDCA2Q69YH5 1023 aaPredicted RBP5.91□□□□□ -1.46
VPS41-210ENST00000462429 CYP4F22Q6NT55 531 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 ABHD17CQ6PCB6 329 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 MPZL3Q6UWV2 235 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 KRT26Q7Z3Y9 468 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 PIP4K2CQ8TBX8 421 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 WNK4Q96J92 1243 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 CABP5Q9NP86 173 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 SLC6A20Q9NP91 592 aa5.91□□□□□ -1.46
VPS41-210ENST00000462429 ZC3H12DA2A288 527 aaKnown RBP5.9□□□□□ -1.46
VPS41-210ENST00000462429 M0R2C6 588 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 ZBTB7AO95365 584 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 COL6A2P12110 1019 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 CNGA1P29973 690 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 SLC9A5Q14940 896 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 HABP4Q5JVS0 413 aaKnown RBP5.9□□□□□ -1.46
VPS41-210ENST00000462429 EP400NLQ6ZTU2 488 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 CISD2Q8N5K1 135 aaKnown RBP5.9□□□□□ -1.46
VPS41-210ENST00000462429 ZCRB1Q8TBF4 217 aaKnown RBP5.9□□□□□ -1.46
VPS41-210ENST00000462429 SMOC1Q9H4F8 434 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 FAM53CQ9NYF3 392 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 CBLCQ9ULV8 474 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 ZNF652Q9Y2D9 606 aa5.9□□□□□ -1.46
VPS41-210ENST00000462429 HRKO00198 91 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 GLRX3O76003 335 aaKnown RBP5.89□□□□□ -1.47
VPS41-210ENST00000462429 PDE6AP16499 860 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 MAPKAPK2P49137 400 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 LACTBP83111 547 aaPredicted RBP5.89□□□□□ -1.47
VPS41-210ENST00000462429 ARHGAP44Q17R89 818 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 ZC3H14Q6PJT7 736 aaKnown RBP5.89□□□□□ -1.47
VPS41-210ENST00000462429 RPTNQ6XPR3 784 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 ARHGAP36Q6ZRI8 547 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 OVCH1Q7RTY7 1134 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 RNF180Q86T96 592 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 KIF18BQ86Y91 864 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 C2orf69Q8N8R5 385 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 UHMK1Q8TAS1 419 aaKnown RBP5.89□□□□□ -1.47
VPS41-210ENST00000462429 PHOSPHO1Q8TCT1 267 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 ORAI3Q9BRQ5 295 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 KLHL14Q9P2G3 628 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 DSEQ9UL01 958 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 SIT1Q9Y3P8 196 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 PCDHB4Q9Y5E5 795 aa5.89□□□□□ -1.47
VPS41-210ENST00000462429 FAM83GA6ND36 823 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 ZNF503-AS2A6NEH8 195 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 CBX4O00257 560 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 NKRFO15226 690 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS41-210ENST00000462429 SGSM2O43147 1006 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 TADA3O75528 432 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 KRT15P19012 456 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 IBSPP21815 317 aaPredicted RBP5.88□□□□□ -1.47
VPS41-210ENST00000462429 YBX1P67809 324 aaKnown RBP5.88□□□□□ -1.47
VPS41-210ENST00000462429 PRR5P85299 388 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 PCBP1Q15365 356 aaKnown RBP eCLIP5.88□□□□□ -1.47
VPS41-210ENST00000462429 PTPROQ16827 1216 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 PLEKHN1Q494U1 663 aaPredicted RBP5.88□□□□□ -1.47
VPS41-210ENST00000462429 PKN3Q6P5Z2 889 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 DDX46Q7L014 1031 aaKnown RBP5.88□□□□□ -1.47
VPS41-210ENST00000462429 MILR1Q7Z6M3 343 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 OSTM1Q86WC4 334 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 TRIM48Q8IWZ4 208 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 NLGN4XQ8N0W4 816 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 CHST14Q8NCH0 376 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 LEO1Q8WVC0 666 aaPredicted RBP5.88□□□□□ -1.47
VPS41-210ENST00000462429 TSPAN17Q96FV3 270 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 MTFR1LQ9H019 292 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 RXFP1Q9HBX9 757 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 MYOTQ9UBF9 498 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 PALD1Q9ULE6 856 aa5.88□□□□□ -1.47
VPS41-210ENST00000462429 SLC12A8A0AV02 714 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 IQCJ-SCHIP1C9J366 451 aaPredicted RBP5.87□□□□□ -1.47
VPS41-210ENST00000462429 ZNF561-AS1K7EIQ3 104 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 GAS7O60861 476 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 CPEP16870 476 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 TAL1P17542 331 aaPredicted RBP5.87□□□□□ -1.47
VPS41-210ENST00000462429 JAM2P57087 298 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 SART3Q15020 963 aaKnown RBP5.87□□□□□ -1.47
VPS41-210ENST00000462429 FIGNQ5HY92 759 aa5.87□□□□□ -1.47
VPS41-210ENST00000462429 ZNF605Q86T29 641 aa5.87□□□□□ -1.47
Retrieved 100 of 20,778 RNA–protein pairs in 24.7 ms