RNA–Protein interactions for RNA: ENST00000458707.1

VPS50-208, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 1,898 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-208ENST00000458707 RNF10Q8N5U6 811 aaKnown RBP9.41□□□□□ -0.9
VPS50-208ENST00000458707 TSEN2Q8NCE0 465 aaKnown RBP9.41□□□□□ -0.9
VPS50-208ENST00000458707 C1orf131Q8NDD1 294 aaKnown RBP9.41□□□□□ -0.9
VPS50-208ENST00000458707 RASSF8Q8NHQ8 419 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 RASGRP4Q8TDF6 673 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 GPKOWQ92917 476 aaPredicted RBP eCLIP9.41□□□□□ -0.9
VPS50-208ENST00000458707 CEP89Q96ST8 783 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 PAGR1Q9BTK6 254 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 EDEM3Q9BZQ6 932 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 MLXIPQ9HAP2 919 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 TSKSQ9UJT2 592 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 FOCADQ5VW36 1801 aa9.41□□□□□ -0.9
VPS50-208ENST00000458707 SSU72P8A0A1W2PR75 194 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 RBAK-RBAKDNI3L0D1 243 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 CAMTA2O94983 1202 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 ADAMTS2O95450 1211 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 EIF4A3P38919 411 aaKnown RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 AMPD3Q01432 767 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 SETDB1Q15047 1291 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 INF2Q27J81 1249 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 CNNM4Q6P4Q7 775 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 NFRKBQ6P4R8 1299 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 INTS5Q6P9B9 1019 aaKnown RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 CCDC91Q7Z6B0 441 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 CCDC84Q86UT8 332 aaPredicted RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 CABP7Q86V35 215 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 CD302Q8IX05 232 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 KIAA0895Q8NCT3 520 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 RNF25Q96BH1 459 aaPredicted RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 PCMTD1Q96MG8 357 aaPredicted RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 TLR10Q9BXR5 811 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 CRNKL1Q9BZJ0 848 aaKnown RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 EHD4Q9H223 541 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 SEMA6BQ9H3T3 888 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 GDF3Q9NR23 364 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 TCP11L1Q9NUJ3 509 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 BARHL2Q9NY43 387 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 MAD2L2Q9UI95 211 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 SUFUQ9UMX1 484 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 ROBO3Q96MS0 1386 aa9.4□□□□□ -0.9
VPS50-208ENST00000458707 TNRC6CQ9HCJ0 1690 aaKnown RBP9.4□□□□□ -0.9
VPS50-208ENST00000458707 ANKRD33BA6NCL7 494 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 TSPY2A6NKD2 308 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 STXBP3O00186 592 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 NKRFO15226 690 aaKnown RBP eCLIP9.4□□□□□ -0.91
VPS50-208ENST00000458707 HSF2BPO75031 334 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 OR52Z1P0C646 297 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 FCER1AP12319 257 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 PAFAH1B1P43034 410 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 ORC2Q13416 577 aaPredicted RBP9.4□□□□□ -0.91
VPS50-208ENST00000458707 MAN2A1Q16706 1144 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 TXNRD1Q16881 649 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 CCDC178Q5BJE1 867 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 CAVIN4Q5BKX8 364 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 KLHDC7AQ5VTJ3 777 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 C8orf74Q6P047 294 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 KDM7AQ6ZMT4 941 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 B4GALNT4Q76KP1 1039 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 FBXO33Q7Z6M2 555 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 C2CD5Q86YS7 1000 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 IQCKQ8N0W5 287 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 STAG2Q8N3U4 1231 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 BAP1Q92560 729 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 KAT2BQ92831 832 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 ARL8AQ96BM9 186 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 FAM84BQ96KN1 310 aaPredicted RBP9.4□□□□□ -0.91
VPS50-208ENST00000458707 ZIM3Q96PE6 472 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 NDST4Q9H3R1 872 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 DEF6Q9H4E7 631 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 IL17RBQ9NRM6 502 aa9.4□□□□□ -0.91
VPS50-208ENST00000458707 NHSQ6T4R5 1651 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 COL24A1Q17RW2 1714 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 SRRM3A6NNA2 597 aaPredicted RBP9.39□□□□□ -0.91
VPS50-208ENST00000458707 EPHB6O15197 1021 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 CYTH3O43739 400 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 AKR1B10O60218 316 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 MAGEA1P43355 309 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 ASIC1P78348 528 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 SLC7A5Q01650 507 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 MECOMQ03112 1051 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 SLC35G1Q2M3R5 365 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 ZC3H12AQ5D1E8 599 aaKnown RBP9.39□□□□□ -0.91
VPS50-208ENST00000458707 CCDC181Q5TID7 509 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 MCTP2Q6DN12 878 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 PNMA1Q8ND90 353 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 RUFY1Q96T51 708 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 PLIN2Q99541 437 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 MMTAG2Q9BU76 263 aaKnown RBP9.39□□□□□ -0.91
VPS50-208ENST00000458707 ZMYND12Q9H0C1 365 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 RBM12Q9NTZ6 932 aaKnown RBP9.39□□□□□ -0.91
VPS50-208ENST00000458707 CCDC87Q9NVE4 849 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 SALL4Q9UJQ4 1053 aa9.39□□□□□ -0.91
VPS50-208ENST00000458707 PVALEFA0A1B0GWK0 134 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 GRID2IPA4D2P6 1211 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 LRRC53A6NM62 1247 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 FGFR1OPO95684 399 aaKnown RBP9.38□□□□□ -0.91
VPS50-208ENST00000458707 CYP2D6P10635 497 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 INPP5BP32019 993 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 LIG3P49916 1009 aa9.38□□□□□ -0.91
VPS50-208ENST00000458707 LRRC63Q05C16 580 aa9.38□□□□□ -0.91
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms